Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0475 ATGGAGTTAGCTTTAAGCCTTGGAGATGGACCCAAGCCGTTCCAGTTTCTCGACAAGAACCACAAGACGATCAAGATGGCTGAAAATAAAAGCAATACTAAGGATGTTGAAATGTTTTGCATGGGTTTAGGTACTGGATTCGGATCTTTAAACCCGTTCGCAGACAAACGGGCGACCACCCGTCAAAGTTCCGACGACGATGACGATTACGAGGATGACGACGATCGAGATCCGCCGGTTCAGCAGCTGAATCTCTTACCTTTAGTTCCGGTTCATCGTACCTCGTCTTCTATTAATTCTCACCTTCCTTTTCCATGGCTGGCAGATAACTTGATGACTGAACCTGGTTCGAGTGAAGGACAAGGGAGGGGGTTGGATGTGAGCCGGTTGCCGGGAGTGGGGGTGGAGGCTGGGGAGGATGAGGGTACCGAAGATAGAGGAGCCGACATGTCGTCTCCTAACAGCGCTGTGTCGTCTTTCCAGATGGATATTTTTGGCGTCGGAAGTGGAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGGAGAAACAAGAGAGATATGGATCAGTTTGAGAGTGAGAGAGCGAGTTCTAGAGCGAGTGATGATGAAGAAAACGGGTCGACCCGGAAGAAGCTCAGGCTGTCTAAAGAACAGTCTGCTTTTCTTGAAGAGAGCTTCAAAGAACACAGCACTCTCAATCCTAAGCAGAAACTTGCACTGGCAAAGCAGTTGAATCTTCGTCCTCGCCAAGTAGAAGTGTGGTTTCAAAACCGAAGAGCAAGGACAAAGTTGAAGCAGACAGAGGTAGACTGTGAGTATTTAAAGAGGTGCTGCGAGACACTGACAGAAGAGAATCGGAGGTTACAAAAAGAACTACAAGAATTAAGAGCTTTGAAAACTTCTCAGCCTTTTTACATGCAACTTCCTGCCACCACTCTTACCATGTGCCCCTCTTGTGAGCGAGTCGCCACCACCACCACCACCAGCACTACCACTGTCACCGCTTCTGCCGCCAAACCTACCTTGTGCCAGCTTGGTAAACCTAGGATATTTCCATATTCTTCTTCTCAAACTCATCAACCTGCTTCATGA 1089 48.58 MELALSLGDGPKPFQFLDKNHKTIKMAENKSNTKDVEMFCMGLGTGFGSLNPFADKRATTRQSSDDDDDYEDDDDRDPPVQQLNLLPLVPVHRTSSSINSHLPFPWLADNLMTEPGSSEGQGRGLDVSRLPGVGVEAGEDEGTEDRGADMSSPNSAVSSFQMDIFGVGSGGRGGGGGGGGRNKRDMDQFESERASSRASDDEENGSTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATTTTTSTTTVTASAAKPTLCQLGKPRIFPYSSSQTHQPAS 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3895198 3896748 - Conep19aG0049300.1 Cone19ag0475 458912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0475 362 MobiDBLite consensus disorder prediction 148 162 - -
Cone19ag0475 362 ProSiteProfiles 'Homeobox' domain profile. 204 264 IPR001356 GO:0003677(InterPro)
Cone19ag0475 362 Gene3D - 212 262 - -
Cone19ag0475 362 Coils Coil 270 300 - -
Cone19ag0475 362 MobiDBLite consensus disorder prediction 183 213 - -
Cone19ag0475 362 MobiDBLite consensus disorder prediction 113 213 - -
Cone19ag0475 362 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 62 331 IPR050762 -
Cone19ag0475 362 FunFam Homeobox-leucine zipper protein 18 192 269 - -
Cone19ag0475 362 MobiDBLite consensus disorder prediction 51 83 - -
Cone19ag0475 362 ProSitePatterns 'Homeobox' domain signature. 239 262 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone19ag0475 362 Pfam Homeodomain 208 262 IPR001356 GO:0003677(InterPro)
Cone19ag0475 362 SMART HOX_1 206 268 IPR001356 GO:0003677(InterPro)
Cone19ag0475 362 Pfam Homeobox associated leucine zipper 264 298 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone19ag0475 362 SMART halz 264 307 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone19ag0475 362 SUPERFAMILY Homeodomain-like 198 265 IPR009057 -
Cone19ag0475 362 CDD homeodomain 208 265 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0307 Cone-Chr17:1456852 Cone19ag0475 Cone-Chr19:3895198 1.18E-82 dispersed
Cone19ag0475 Cone-Chr19:3895198 Cone20ag1102 Cone-Chr20:7605619 2.59E-78 dispersed
Cone13ag0523 Cone-Chr13:5522121 Cone19ag0475 Cone-Chr19:3895198 1.82E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45301 PF00900 Ribosomal_S4e 4.80E-22 CL0021 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0475 K09338 - vvi:100265773 379.022