Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0481 ATGGCAGAAAGCGAGGATATCCAGCCACTCGTTTGTGACAATGGAACAGGAATGGTCAAGGCTGGATTTGCAGGTGATGATGCTCCGAGGGCTGTGTTTCCTAGTATTGTGGGCCGCCCTCGCCATACTGGCGTGATGGTCGGAATGGGACAGAAGGATGCTTATGTAGGGGATGAGGCCCAATCAAAGAGAGGTATCTTGACTCTGAAGTATCCAATTGAACATGGAATTGTTAGCAATTGGGATGATATGGAGAAAATCTGGCATCATACTTTCTACAATGAGCTCCGTGTAGCTCCTGAAGAGCATCCTGTCCTCCTCACAGAAGCGCCTCTTAATCCCAAGGCTAATAGAGAGAAAATGACTCAGATTATGTTCGAGACATTTAACACCCCTGCTATGTATGTTGCTATCCAAGCCGTTCTTTCCCTCTATGCTAGTGGTCGTACAACCGGTATTGTTCTGGATTCTGGGGATGGTGTTAGTCACACAGTCCCTATATACGAAGGGTATGCCCTTCCGCATGCCATTCTCCGTTTGGACCTGGCTGGCCGTGATCTGACAGACGCCCTTATGAAGATCTTAACTGAACGTGGATATTCTTTCACCACCACAGCAGAACGAGAAATTGTAAGAGACATGAAGGAGAAACTTTCCTATATTGCTCTAGACTATGAACAAGAGCTAGAGACATCTAAAACCAGCTCAACCGTGGAGAAAAGCTTTGAGCTGCCAGATGGTCAAGTGATCACCATTGGAGGTGAGCGGTTCCGTTGCCCTGAGGTTCTCTTCCAGCCTTCCATGATTGGAATGGAAGCAGCTGGAATCCATGAAACCACATACAATTCTATCATGAAGTGTGATGTTGATATTAGGAAGGATCTTTATGGGAATATTGTGCTCAGTGGAGGGTCCACTATGTTCCCTGGAATAGCTGATAGGATGAGCAAGGAGATAACTGCATTAGCTCCGAGTAGCATGAAGATTAAGGTGGTAGCACCGCCCGAGAGAAAATACAGTGTTTGGATTGGAGGCTCTATTTTGGCTTCTCTCAGCACTTTCCAACAGATGTGGATTGCAAAGGCCGAGTATGATGAATCTGGGCCGTCAATCGTTCACAGGAAATGCTTCTGA 1134 46.56 MAESEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSTVEKSFELPDGQVITIGGERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3952694 3954902 + Conep19aG0049900.1 Cone19ag0481 458918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0481 377 FunFam Major actin 260 340 - -
Cone19ag0481 377 PRINTS Actin signature 51 62 IPR004000 -
Cone19ag0481 377 PRINTS Actin signature 238 254 IPR004000 -
Cone19ag0481 377 PRINTS Actin signature 63 85 IPR004000 -
Cone19ag0481 377 PRINTS Actin signature 142 161 IPR004000 -
Cone19ag0481 377 PRINTS Actin signature 28 37 IPR004000 -
Cone19ag0481 377 PRINTS Actin signature 117 130 IPR004000 -
Cone19ag0481 377 SMART actin_3 7 377 IPR004000 -
Cone19ag0481 377 Gene3D - 140 340 - -
Cone19ag0481 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cone19ag0481 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cone19ag0481 377 FunFam Putative actin-related protein 5 341 369 - -
Cone19ag0481 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cone19ag0481 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cone19ag0481 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Cone19ag0481 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Cone19ag0481 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cone19ag0481 377 FunFam Actin, muscle 182 273 - -
Cone19ag0481 377 Gene3D - 10 371 - -
Cone19ag0481 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cone19ag0481 377 Pfam Actin 5 377 IPR004000 -
Cone19ag0481 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0481 Cone-Chr19:3952694 Cone3ag0336 Cone-Chr3:1708645 1.68E-273 dispersed
Cone12ag0933 Cone-Chr12:8147612 Cone19ag0481 Cone-Chr19:3952694 3.37E-34 transposed
Cone5ag1153 Cone-Chr5:5193356 Cone19ag0481 Cone-Chr19:3952694 1.04E-71 transposed
Cone10ag0078 Cone-Chr10:447368 Cone19ag0481 Cone-Chr19:3952694 1.83E-35 wgd
Cone13ag0532 Cone-Chr13:5595558 Cone19ag0481 Cone-Chr19:3952694 4.32E-276 wgd
Cone19ag0481 Cone-Chr19:3952694 Cone3ag0092 Cone-Chr3:533119 1.44E-274 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0481 K10355 - mdm:103424317 744.962