Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0482 ATGGAATCCATGGAAATCTATTCGGAGAAGAGCCTTCAGAGAAAGCAGTCCACCTACAAACCGCTGGATGAGAAGTATGGAATTCAGAAGGAGACGTATAGGGGTCAGCAGTACAGCCATATTTACTTTGCTCGGCTTCACTTGATGCGAACGCTTCTCTACTCCCTTGTTCCTAACTGGAAATCACATTTACCTGTTTGCACTGTCTTGGGATTGGAACAAGACAAGGAATGCATCGTAGTTGGAACCTTGTACAAGCACATGAAACTAAAACCTACCATTCTGGATGAGTATTCTAAGGAGAGATTAGCCACCCCACTTGCCATGCCTCGTAACTTTGTTCACCCAGATGATCAACTAGTTTTGGAAGATGAAAGTGGGAGAGTTAAGCTTTCTGGGATTGCGTTTCTTCCTTCTGCATATGTAACCGGGACTGTCGTTGCATTACATGGGAAGGAAACTGGTGCTGGTGACTTTTTGGTTTTAGATGTCATGGAAGCTGGTCTACCACCCCAGATAGAGCTGCCACTGTTAAGAGAGGACAAGTATGTGGTATTTGTATCAGGCCTAAACATTGGGAGCAGATCCAATCCTCTCCAGTTTCAGCTTCTTGTTGATCATATAACTGGACATTTAGGGGATGAGAAGGAACTGGGTATTGCAGCCCAAATAGTGCAGGTTGTAATTGCTGGAAATTCTATTGAAATTCCCAATGGGATTGTTAACGGACAGAATTTGACTGCCAAGGATCAATCAAGGCTCTCTCAGCCAATTATGGAACTGGATATCTTATTGACTCAGCTTGCCGTGGGATTGCCTGTTGACATCATGCCGGGCCCCAATGACCCGGCCAACTATGCCTTACCTCAGCAGCCGTTGCACAGATGCCTTTTCCCTGGATCATCTGCTTATAACACTTTTAGATCCTGTACTAACCCTCACTGCTTTGAGCTTGACGACATAAGATTTCTCGGAACATCGGGTCAGAACATAGATGATCTTGATAAATATTCAGAAGCAAAGGATAGGCTTGAATTTATGGAGAGGACATTAAAATGGAGACATATAGCCCCAACGGCTCCCAACACTCTTGGATGCTATCCTTTCACTGATAGGGATCCTTTCATGCTCGAGAACTGTCCTCATGTTTATTACATTGGTAATCAGGATAAATACGATACTCGCTTGATCAAAGGTGCCGAAGGGCAGCTGGTAAGACTCATTTGCATTCCTAAGTTCTGCGATACTGGAATTGCTGTTATGCTAAACATGAGAAATCTGGACTGTCACACTCTCAGCTTTGCGACGGAAATCAGTTCATGA 1323 44.22 MESMEIYSEKSLQRKQSTYKPLDEKYGIQKETYRGQQYSHIYFARLHLMRTLLYSLVPNWKSHLPVCTVLGLEQDKECIVVGTLYKHMKLKPTILDEYSKERLATPLAMPRNFVHPDDQLVLEDESGRVKLSGIAFLPSAYVTGTVVALHGKETGAGDFLVLDVMEAGLPPQIELPLLREDKYVVFVSGLNIGSRSNPLQFQLLVDHITGHLGDEKELGIAAQIVQVVIAGNSIEIPNGIVNGQNLTAKDQSRLSQPIMELDILLTQLAVGLPVDIMPGPNDPANYALPQQPLHRCLFPGSSAYNTFRSCTNPHCFELDDIRFLGTSGQNIDDLDKYSEAKDRLEFMERTLKWRHIAPTAPNTLGCYPFTDRDPFMLENCPHVYYIGNQDKYDTRLIKGAEGQLVRLICIPKFCDTGIAVMLNMRNLDCHTLSFATEISS 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3984410 3987402 - Conep19aG0050000.1 Cone19ag0482 458919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0482 440 CDD MPP_PolD2_C 183 434 IPR041863 -
Cone19ag0482 440 FunFam DNA polymerase delta small subunit 170 440 - -
Cone19ag0482 440 Pfam DNA polymerase alpha/epsilon subunit B 184 392 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
Cone19ag0482 440 Gene3D - 44 167 - -
Cone19ag0482 440 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 8 432 IPR024826 GO:0006271(PANTHER)|GO:0042575(PANTHER)|GO:0043625(PANTHER)
Cone19ag0482 440 Pfam DNA polymerase delta subunit OB-fold domain 37 164 IPR040663 -
Cone19ag0482 440 Gene3D - 172 439 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0534 Cone-Chr13:5604101 Cone19ag0482 Cone-Chr19:3984410 1.07e-317 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0482 K02328 - vvi:100241865 746.888