Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0495 ATGACCAAACAGCTTACTCTAACGTACTTCAGTGTAGTTGTCTACTTGACAATTCTGGCATTAGTGGCTAAGGCATACACTGACCCACACGATGTTAGTGCACTTCACAATCTGTACAGGACCTTGAACTACCCAATGGAGTTCAAGGGATGGAAAGCAGAGGGTGGGGACCCTTGTGACCAATCATGGGAAGGAGTGTCTTGTTTCGGGTCATCTGTCATATACCTTAAACTTCATGGACTAAACCTCAGTGGCAATCTAGGAGACCAGCTCTATAATCTCCACAATCTGAAGCAACTTGATGTTAGCTTCAATTTCATTTCTGGTGAAATTCCAGTAGGCCTTCCCCCTAATGTCACTCATATAAATATGGCTTGTAACAATTTTAGCAAAAATATTCCTCATTCGTTGACACTGATGAGAAGTCTTAGACATCTGAATCTAAGCCATAATTTGTTATCTGGCCCAATTGGAAATGTGTTTACTGGCTTACAGAATCTGCGAGAGATGGATCTATCATACAATAACTTTACTGGAGATCTGCCTAGCTCTTTTGGGTCTCTGACAAGTATTTCTGGATTGTTCCTGCAACATAACTACTTCACTGGATCAGTGGCCTATTTGGCTAACCTTCCACTAACTGACCTGAACATACAAGACAACTTTTTCAGTGGCATTGTTCCTAAGCATTTTGATACCATACCAAAATTATGGATTGGGGGAAATAAGTTTCATGCATGGGACAATTCTCTACCATGGGATTTCCCTCTGCAAACTGTGCCTACTGAGCAAAACATTACTGGCCCTCCAACTACTAAGTCAAATGCCATCAAGAATTATCCCTCCCCTACTGTGACGGGACATAAGAAGAGAAGGCTGCTGGGTACTGGAGGAATAGCCTTCTTAGTTGGTGGAGGAACTCTAGTGGCAATATCTGCAGGGATCATCTCTGCGATGATCCGAGTTAAACAGTCACGTGCAAAGAAGGATAGAAGCTCAGGAGGAGGAATCAGCTCTGTTTCACCATTTTCTCTTCCAATAACAACAGTTATAGATGGTTTTTCACCTACACCAGAAAAGAGCCCACAGATCTTGCCTTTGAGTTCTCCACCAAAGCTTACTCCGAGGCGTTTACGTCCTATATACCACATAGGGAACGCCAAAATTTCCAAGAGACGAAGTTTCTCTCAGAAATGTACATTTCCAATCAGAACAAAATTTTACACTGTGGCGGAGCTTCAATCTGCTACTAACAGCTTCAGTGTAGACAACCTACTTGGAAAGGGATCTCTTGGTTCAGTTTACAGGGCTAAATTTCCTGATGGAAAAGTTTTGGCCGTGAAGAATATCAATTTGGTTGGACTGTCTTTCGCTGAAGAAGAACAGTTCTTAGACGTAGTTTGGACTGTATCGGGTTTGAGGCACCCCAACATTGTAACACTCATCGGATACTGTGTGGAACATGGACAACATCTCCTCATATATGAATATGTCAGAAACTTGTCCCTTTCTGATGCTCTGCACACTGAAGCATTCAAGCCTCTCTCATGGGTCGTCCGTCTACAGATCTCTCTCTGCATTGCTCGAGCTTTGGATTATCTGCACTCCAAATTTTCACCACCAGTTGCTCATACCAACCTGAAGGCTGCCAACATCTTGCTTGATGAAGAACTGGTGCCTCGGATCTGTGACTGTGGTCTAGGTTCTTTAAGGCCACTTACAAGCAACAGAGCCAAGATTAAGGCTTCTGAAATCGCTATCCGTGATAGTGGCTATATCGAACCTGAAATCAGCGAACCAAGAATCGACAATACAAAGAGTGATGTGTATGCTTTTGGAGTGTTGCTTTTGGAGATAGTAACAGGAAGGAAACCATTTGATAGTGGAAGACCAAGCAACAATCAATCCCTTGTGGAATGGGCTTCATCTCGGCTCCACGACAGTGAGAGTTTGGCAGATATGGTGGATCCGGGAATTAGAGGAACACTCTCCTCCAAGTCACTCTCCCGCTTTGCCGATATTATCTCCCTCTGTATACAGCCTGTACGGGAATTCCGGCCTCCTATGTCGGAAATTGTGGAGTCTCTGGCATCTCTGCTTGAAAAGTTCAACACGGCGAATATTGGCACTGCAGAAGGTGGAACTTCAACTGAAGCCTTGGAAGGGTCTTTTAGATCAACAAACACCCGTTTTGTAGGATCACCGGCACATAGTTGCCTCTCACTCTAG 2229 43.88 MTKQLTLTYFSVVVYLTILALVAKAYTDPHDVSALHNLYRTLNYPMEFKGWKAEGGDPCDQSWEGVSCFGSSVIYLKLHGLNLSGNLGDQLYNLHNLKQLDVSFNFISGEIPVGLPPNVTHINMACNNFSKNIPHSLTLMRSLRHLNLSHNLLSGPIGNVFTGLQNLREMDLSYNNFTGDLPSSFGSLTSISGLFLQHNYFTGSVAYLANLPLTDLNIQDNFFSGIVPKHFDTIPKLWIGGNKFHAWDNSLPWDFPLQTVPTEQNITGPPTTKSNAIKNYPSPTVTGHKKRRLLGTGGIAFLVGGGTLVAISAGIISAMIRVKQSRAKKDRSSGGGISSVSPFSLPITTVIDGFSPTPEKSPQILPLSSPPKLTPRRLRPIYHIGNAKISKRRSFSQKCTFPIRTKFYTVAELQSATNSFSVDNLLGKGSLGSVYRAKFPDGKVLAVKNINLVGLSFAEEEQFLDVVWTVSGLRHPNIVTLIGYCVEHGQHLLIYEYVRNLSLSDALHTEAFKPLSWVVRLQISLCIARALDYLHSKFSPPVAHTNLKAANILLDEELVPRICDCGLGSLRPLTSNRAKIKASEIAIRDSGYIEPEISEPRIDNTKSDVYAFGVLLLEIVTGRKPFDSGRPSNNQSLVEWASSRLHDSESLADMVDPGIRGTLSSKSLSRFADIISLCIQPVREFRPPMSEIVESLASLLEKFNTANIGTAEGGTSTEALEGSFRSTNTRFVGSPAHSCLSL 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4088921 4092750 + Conep19aG0051300.1 Cone19ag0495 458932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0495 742 SUPERFAMILY Protein kinase-like (PK-like) 394 696 IPR011009 -
Cone19ag0495 742 FunFam Leucine-rich repeat receptor-like protein kinase 498 707 - -
Cone19ag0495 742 Pfam Leucine rich repeat 160 200 IPR001611 GO:0005515(InterPro)
Cone19ag0495 742 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 255 - -
Cone19ag0495 742 Pfam Leucine Rich Repeat 96 115 IPR001611 GO:0005515(InterPro)
Cone19ag0495 742 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Cone19ag0495 742 Pfam Protein tyrosine and serine/threonine kinase 422 696 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0495 742 ProSiteProfiles Protein kinase domain profile. 420 700 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0495 742 Gene3D Ribonuclease Inhibitor 28 266 IPR032675 -
Cone19ag0495 742 SMART LRR_typ_2 140 163 IPR003591 -
Cone19ag0495 742 SMART LRR_typ_2 94 118 IPR003591 -
Cone19ag0495 742 SMART LRR_typ_2 164 187 IPR003591 -
Cone19ag0495 742 Gene3D Phosphorylase Kinase; domain 1 383 497 - -
Cone19ag0495 742 Gene3D Transferase(Phosphotransferase) domain 1 498 714 - -
Cone19ag0495 742 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 698 IPR046959 -
Cone19ag0495 742 SUPERFAMILY L domain-like 26 244 - -
Cone19ag0495 742 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 386 497 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0495 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0495 Cone-Chr19:4088921 Cone5ag1846 Cone-Chr5:12958518 7.61E-139 dispersed
Cone13ag0544 Cone-Chr13:5698440 Cone19ag0495 Cone-Chr19:4088921 9.94E-256 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1247 . . . . Bpe04g01463 . Bma04g01505 . Cmo06g00081 . . . . . . . Cpe08g01391 . . . . . . . . . . . . . . . . . Cone19ag0495 . . . Cme04g02226 . Blo09g00427 Bda03g01600 . . . . . . . . Cma06g00088 . Car06g00077 Car14g00396 Cpe03g00382 . . . . . . . . Cla10g01655 . . . . . . Lsi03g01722 Csa03g03593 Chy04g01764 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag1487 . 31 789 Strubbelig Receptor Gene Family AT4G03390 61.9 2.4e-205 713.0
Cone12ag1436 . 31 777 Strubbelig Receptor Gene Family AT4G03390 60.9 6.9e-205 711.4
Cone6ag1064 . 28 731 Strubbelig Receptor Gene Family AT4G03390 53.4 3.7e-166 582.8
Cone9ag1056 . 28 731 Strubbelig Receptor Gene Family AT4G03390 52.8 5.9e-164 575.5
Cone19ag0495 . 2 741 Strubbelig Receptor Gene Family AT5G06820 52.6 1.3e-184 644.0
Cone4ag0869 . 21 700 Strubbelig Receptor Gene Family AT1G78980 63.8 1.1e-193 674.1
Cone7ag0827 . 30 667 Strubbelig Receptor Gene Family AT1G78980 50.1 6.1e-136 482.3
Cone4ag0853 . 30 695 Strubbelig Receptor Gene Family AT1G78980 52.6 2.6e-134 476.9
Cone17ag0031 . 25 671 Strubbelig Receptor Gene Family AT1G78980 51.8 4.7e-128 456.1
Cone8ag1487 . 21 665 Strubbelig Receptor Gene Family AT2G20850 50.3 9.1e-134 474.9
Cone4ag0869 . 19 679 Strubbelig Receptor Gene Family AT3G13065 55.8 1.3e-149 527.7
Cone4ag0853 . 12 690 Strubbelig Receptor Gene Family AT3G13065 50.2 3.9e-111 399.8
Cone17ag0031 . 23 668 Strubbelig Receptor Gene Family AT3G13065 51.0 3.9e-111 399.8
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT3G13065 52.3 1.6e-80 298.1
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT3G13065 50.9 2.6e-78 290.8
Cone17ag0031 . 384 668 Strubbelig Receptor Gene Family AT1G11130 53.0 1.5e-81 301.6
Cone4ag0853 . 404 690 Strubbelig Receptor Gene Family AT1G11130 51.6 8.0e-80 295.8
Cone8ag1487 . 21 665 Strubbelig Receptor Gene Family AT2G20850 50.3 9.1e-134 474.9
Cone19ag0495 . 2 741 Strubbelig Receptor Gene Family AT5G06820 52.6 1.3e-184 644.0
Cone8ag1487 . 31 789 Strubbelig Receptor Gene Family AT4G03390 61.9 2.4e-205 713.0
Cone12ag1436 . 31 777 Strubbelig Receptor Gene Family AT4G03390 60.9 6.9e-205 711.4
Cone6ag1064 . 28 731 Strubbelig Receptor Gene Family AT4G03390 53.4 3.7e-166 582.8
Cone9ag1056 . 28 731 Strubbelig Receptor Gene Family AT4G03390 52.8 5.9e-164 575.5
Cone4ag0869 . 19 679 Strubbelig Receptor Gene Family AT3G13065 55.8 1.3e-149 527.7
Cone4ag0853 . 12 690 Strubbelig Receptor Gene Family AT3G13065 50.2 3.9e-111 399.8
Cone17ag0031 . 23 668 Strubbelig Receptor Gene Family AT3G13065 51.0 3.9e-111 399.8
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT3G13065 52.3 1.6e-80 298.1
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT3G13065 50.9 2.6e-78 290.8
Cone4ag0869 . 21 700 Strubbelig Receptor Gene Family AT1G78980 63.8 1.1e-193 674.1
Cone7ag0827 . 30 667 Strubbelig Receptor Gene Family AT1G78980 50.1 6.1e-136 482.3
Cone4ag0853 . 30 695 Strubbelig Receptor Gene Family AT1G78980 52.6 2.6e-134 476.9
Cone17ag0031 . 25 671 Strubbelig Receptor Gene Family AT1G78980 51.8 4.7e-128 456.1
Cone4ag0853 . 3 719 Strubbelig Receptor Gene Family AT1G53730 64.8 2.1e-208 723.0
Cone7ag0827 . 1 691 Strubbelig Receptor Gene Family AT1G53730 61.2 4.7e-208 721.8
Cone17ag0031 . 5 668 Strubbelig Receptor Gene Family AT1G53730 57.4 7.2e-164 575.1
Cone1ag0021 . 1 659 Strubbelig Receptor Gene Family AT1G53730 52.5 1.4e-156 550.8
Cone4ag0869 . 11 699 Strubbelig Receptor Gene Family AT1G53730 51.0 8.8e-154 541.6
Cone7ag0827 . 10 679 Strubbelig Receptor Gene Family AT3G14350 59.6 4.6e-184 642.1
Cone4ag0853 . 13 707 Strubbelig Receptor Gene Family AT3G14350 60.2 6.6e-183 638.3
Cone20ag1372 . 25 168 Strubbelig Receptor Gene Family AT3G14350 69.4 8.4e-45 179.5
Cone1ag0021 . 103 674 Strubbelig Receptor Gene Family AT4G22130 63.5 8.0e-187 651.0
Cone5ag1846 . 150 746 Strubbelig Receptor Gene Family AT4G22130 60.4 1.6e-179 626.7
Cone7ag0827 . 367 682 Strubbelig Receptor Gene Family AT4G22130 65.3 5.1e-117 419.1
Cone4ag0853 . 395 710 Strubbelig Receptor Gene Family AT4G22130 65.3 1.9e-116 417.2
Cone17ag0031 . 329 668 Strubbelig Receptor Gene Family AT4G22130 59.2 7.9e-110 395.2
Cone8ag1487 . 482 783 Strubbelig Receptor Gene Family AT4G22130 61.7 2.4e-106 383.6
Cone12ag1436 . 468 769 Strubbelig Receptor Gene Family AT4G22130 61.1 1.3e-104 377.9
Cone4ag0869 . 367 700 Strubbelig Receptor Gene Family AT4G22130 53.5 6.7e-101 365.5
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT4G22130 61.0 5.3e-98 355.9
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT4G22130 59.6 1.9e-95 347.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82381 PF00931 NB-ARC 7.80E-14 CL0023 Cone PK