Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0495 ATGACCAAACAGCTTACTCTAACGTACTTCAGTGTAGTTGTCTACTTGACAATTCTGGCATTAGTGGCTAAGGCATACACTGACCCACACGATGTTAGTGCACTTCACAATCTGTACAGGACCTTGAACTACCCAATGGAGTTCAAGGGATGGAAAGCAGAGGGTGGGGACCCTTGTGACCAATCATGGGAAGGAGTGTCTTGTTTCGGGTCATCTGTCATATACCTTAAACTTCATGGACTAAACCTCAGTGGCAATCTAGGAGACCAGCTCTATAATCTCCACAATCTGAAGCAACTTGATGTTAGCTTCAATTTCATTTCTGGTGAAATTCCAGTAGGCCTTCCCCCTAATGTCACTCATATAAATATGGCTTGTAACAATTTTAGCAAAAATATTCCTCATTCGTTGACACTGATGAGAAGTCTTAGACATCTGAATCTAAGCCATAATTTGTTATCTGGCCCAATTGGAAATGTGTTTACTGGCTTACAGAATCTGCGAGAGATGGATCTATCATACAATAACTTTACTGGAGATCTGCCTAGCTCTTTTGGGTCTCTGACAAGTATTTCTGGATTGTTCCTGCAACATAACTACTTCACTGGATCAGTGGCCTATTTGGCTAACCTTCCACTAACTGACCTGAACATACAAGACAACTTTTTCAGTGGCATTGTTCCTAAGCATTTTGATACCATACCAAAATTATGGATTGGGGGAAATAAGTTTCATGCATGGGACAATTCTCTACCATGGGATTTCCCTCTGCAAACTGTGCCTACTGAGCAAAACATTACTGGCCCTCCAACTACTAAGTCAAATGCCATCAAGAATTATCCCTCCCCTACTGTGACGGGACATAAGAAGAGAAGGCTGCTGGGTACTGGAGGAATAGCCTTCTTAGTTGGTGGAGGAACTCTAGTGGCAATATCTGCAGGGATCATCTCTGCGATGATCCGAGTTAAACAGTCACGTGCAAAGAAGGATAGAAGCTCAGGAGGAGGAATCAGCTCTGTTTCACCATTTTCTCTTCCAATAACAACAGTTATAGATGGTTTTTCACCTACACCAGAAAAGAGCCCACAGATCTTGCCTTTGAGTTCTCCACCAAAGCTTACTCCGAGGCGTTTACGTCCTATATACCACATAGGGAACGCCAAAATTTCCAAGAGACGAAGTTTCTCTCAGAAATGTACATTTCCAATCAGAACAAAATTTTACACTGTGGCGGAGCTTCAATCTGCTACTAACAGCTTCAGTGTAGACAACCTACTTGGAAAGGGATCTCTTGGTTCAGTTTACAGGGCTAAATTTCCTGATGGAAAAGTTTTGGCCGTGAAGAATATCAATTTGGTTGGACTGTCTTTCGCTGAAGAAGAACAGTTCTTAGACGTAGTTTGGACTGTATCGGGTTTGAGGCACCCCAACATTGTAACACTCATCGGATACTGTGTGGAACATGGACAACATCTCCTCATATATGAATATGTCAGAAACTTGTCCCTTTCTGATGCTCTGCACACTGAAGCATTCAAGCCTCTCTCATGGGTCGTCCGTCTACAGATCTCTCTCTGCATTGCTCGAGCTTTGGATTATCTGCACTCCAAATTTTCACCACCAGTTGCTCATACCAACCTGAAGGCTGCCAACATCTTGCTTGATGAAGAACTGGTGCCTCGGATCTGTGACTGTGGTCTAGGTTCTTTAAGGCCACTTACAAGCAACAGAGCCAAGATTAAGGCTTCTGAAATCGCTATCCGTGATAGTGGCTATATCGAACCTGAAATCAGCGAACCAAGAATCGACAATACAAAGAGTGATGTGTATGCTTTTGGAGTGTTGCTTTTGGAGATAGTAACAGGAAGGAAACCATTTGATAGTGGAAGACCAAGCAACAATCAATCCCTTGTGGAATGGGCTTCATCTCGGCTCCACGACAGTGAGAGTTTGGCAGATATGGTGGATCCGGGAATTAGAGGAACACTCTCCTCCAAGTCACTCTCCCGCTTTGCCGATATTATCTCCCTCTGTATACAGCCTGTACGGGAATTCCGGCCTCCTATGTCGGAAATTGTGGAGTCTCTGGCATCTCTGCTTGAAAAGTTCAACACGGCGAATATTGGCACTGCAGAAGGTGGAACTTCAACTGAAGCCTTGGAAGGGTCTTTTAGATCAACAAACACCCGTTTTGTAGGATCACCGGCACATAGTTGCCTCTCACTCTAG 2229 43.88 MTKQLTLTYFSVVVYLTILALVAKAYTDPHDVSALHNLYRTLNYPMEFKGWKAEGGDPCDQSWEGVSCFGSSVIYLKLHGLNLSGNLGDQLYNLHNLKQLDVSFNFISGEIPVGLPPNVTHINMACNNFSKNIPHSLTLMRSLRHLNLSHNLLSGPIGNVFTGLQNLREMDLSYNNFTGDLPSSFGSLTSISGLFLQHNYFTGSVAYLANLPLTDLNIQDNFFSGIVPKHFDTIPKLWIGGNKFHAWDNSLPWDFPLQTVPTEQNITGPPTTKSNAIKNYPSPTVTGHKKRRLLGTGGIAFLVGGGTLVAISAGIISAMIRVKQSRAKKDRSSGGGISSVSPFSLPITTVIDGFSPTPEKSPQILPLSSPPKLTPRRLRPIYHIGNAKISKRRSFSQKCTFPIRTKFYTVAELQSATNSFSVDNLLGKGSLGSVYRAKFPDGKVLAVKNINLVGLSFAEEEQFLDVVWTVSGLRHPNIVTLIGYCVEHGQHLLIYEYVRNLSLSDALHTEAFKPLSWVVRLQISLCIARALDYLHSKFSPPVAHTNLKAANILLDEELVPRICDCGLGSLRPLTSNRAKIKASEIAIRDSGYIEPEISEPRIDNTKSDVYAFGVLLLEIVTGRKPFDSGRPSNNQSLVEWASSRLHDSESLADMVDPGIRGTLSSKSLSRFADIISLCIQPVREFRPPMSEIVESLASLLEKFNTANIGTAEGGTSTEALEGSFRSTNTRFVGSPAHSCLSL 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4088921 4092750 + Conep19aG0051300.1 Cone19ag0495 458932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0495 742 SUPERFAMILY Protein kinase-like (PK-like) 394 696 IPR011009 -
Cone19ag0495 742 FunFam Leucine-rich repeat receptor-like protein kinase 498 707 - -
Cone19ag0495 742 Pfam Leucine rich repeat 160 200 IPR001611 GO:0005515(InterPro)
Cone19ag0495 742 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 255 - -
Cone19ag0495 742 Pfam Leucine Rich Repeat 96 115 IPR001611 GO:0005515(InterPro)
Cone19ag0495 742 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Cone19ag0495 742 Pfam Protein tyrosine and serine/threonine kinase 422 696 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0495 742 ProSiteProfiles Protein kinase domain profile. 420 700 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0495 742 Gene3D Ribonuclease Inhibitor 28 266 IPR032675 -
Cone19ag0495 742 SMART LRR_typ_2 140 163 IPR003591 -
Cone19ag0495 742 SMART LRR_typ_2 94 118 IPR003591 -
Cone19ag0495 742 SMART LRR_typ_2 164 187 IPR003591 -
Cone19ag0495 742 Gene3D Phosphorylase Kinase; domain 1 383 497 - -
Cone19ag0495 742 Gene3D Transferase(Phosphotransferase) domain 1 498 714 - -
Cone19ag0495 742 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 698 IPR046959 -
Cone19ag0495 742 SUPERFAMILY L domain-like 26 244 - -
Cone19ag0495 742 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 386 497 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0495 Cone-Chr19:4088921 Cone5ag1846 Cone-Chr5:12958518 7.61E-139 dispersed
Cone13ag0544 Cone-Chr13:5698440 Cone19ag0495 Cone-Chr19:4088921 9.94E-256 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82381 PF00931 NB-ARC 7.80E-14 CL0023 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0495 - - - 0.0