Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0496 ATGGATTCAAATATCAATATAAGATCAGAACAAATACAACAAGAACAGCAGCAGCAGAAAAGACAAGGACAGCAGCAGCAGCAGCAGCAACAGAACATGCGGATTCAGACCTACTTACAAGAACATCAACCTCATCAGCATCATCATCAGGCACCATATGGAAATTTGCAGTCGTGTTCATCTTCTTCCCCTATCCCTCCCAATTTCATAAGCAAAGGCGGTAGTGGAGCTTATGATTTGGGAGAATTAGATCAAGCCCTTTTTCAATATTTTGATGGACAAGACCCGGCTAGTTCCAATGTTCATCATAGTAACTTAGGATCAATGAGATCACCTCCTACTTTGAACATCTTCCCGTCTAGGCCGATGCACGTGGAGCCTTCACCAACCAATGGTAGTACGGTATTGATATCTCAAGCTGCAAACAGTAGTGGTCTAAAGAGAGCAGCGGATCACTCATCCATGGACAAAGCGATGAATATAGTATCCGGATCAGGACCCGAACCGGCCAAATCTGTCAAGCGTGAGAGTGGCCGCAAATTAGGTCCAACATCAAGTTCAGAGCAGGACGCACCAAAGACACCAGACCCTAAGACGTTAAGGAGGCTTGCTCAGAATAGAGAGGCAGCCAGGAAAAGCAGGCTCAGAAAGAAGGCATATGTCCAGCAGCTAGAATCTAGTAGAATCAAGCTTGCTCAATTGGAGCAAGAACTGCAGAGAGCTAGATCTCAGGGAATGTACTTCGGTGGAGGAGCACTTATATGGGGTGATCAACAAGGACTTCCAATTGGTATCAACAACATCAGCACAGAAGCGGCGGTGTTTGACATGGAATATGCAAGATGGGTGGAAGAGCACAACAGGCTTCTGTGCGAGCTGAGAGCGGCAGTGCAAGAGCATTTAGCTGAGAATGAGCTGAGGCTGTTCGTTGAAAACATCATAGCTCACTACGACGCAATCGTGAATCTGAAAAGCATGGCTGCCAAATCCGACTTGTTTCATCTGTTCTCCGGCACGTGGAAGACTCCAGCCGAGCGTTGTTTCATGTGGATGGGTGGATATAGGCCGTCTGTGATCATCAAAATAGTGGTGGGCCCAATAGAGCCATTAACGGAGCAACAAATACTGGGCATATGTGGGTTACAGCAATCAACACAAGAAGCAGAGGAAGCTCTCTCACAAGGTCTAGAAGCTTTGAACCAGTCTCTAATGGACACCATAACTTCTGATTCATTGAGCATTCCTCTTAACATGCCTAACTACATGGGTCAAATGGCCATGGCCATCAATAAGCTTTCCACTGTTGAAGATTTTCTCAGACAGGGGGATAATTTGAGGCAGCAGACGATACATAGGCTGGTAGAAATACTGACGACACGGCAGGCGGCGAGGTGCATGCTAGCAATGGCCGAATACTTCCATCGGCTTCGAGCTCTTAGCTCTCTCTGGTTGGCTCGTCCACGCCAAGAATGA 1473 46.91 MDSNINIRSEQIQQEQQQQKRQGQQQQQQQQNMRIQTYLQEHQPHQHHHQAPYGNLQSCSSSSPIPPNFISKGGSGAYDLGELDQALFQYFDGQDPASSNVHHSNLGSMRSPPTLNIFPSRPMHVEPSPTNGSTVLISQAANSSGLKRAADHSSMDKAMNIVSGSGPEPAKSVKRESGRKLGPTSSSEQDAPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLAQLEQELQRARSQGMYFGGGALIWGDQQGLPIGINNISTEAAVFDMEYARWVEEHNRLLCELRAAVQEHLAENELRLFVENIIAHYDAIVNLKSMAAKSDLFHLFSGTWKTPAERCFMWMGGYRPSVIIKIVVGPIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLMDTITSDSLSIPLNMPNYMGQMAMAINKLSTVEDFLRQGDNLRQQTIHRLVEILTTRQAARCMLAMAEYFHRLRALSSLWLARPRQE 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4105973 4110357 + Conep19aG0051400.1 Cone19ag0496 458933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0496 490 FunFam BZIP family transcription factor 197 246 - -
Cone19ag0496 490 MobiDBLite consensus disorder prediction 1 70 - -
Cone19ag0496 490 CDD bZIP_HBP1b-like 198 250 - -
Cone19ag0496 490 PANTHER TRANSCRIPTION FACTOR TGA9 113 489 - -
Cone19ag0496 490 Pfam bZIP transcription factor 198 234 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0496 490 Pfam Seed dormancy control 290 363 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone19ag0496 490 MobiDBLite consensus disorder prediction 50 69 - -
Cone19ag0496 490 Coils Coil 217 244 - -
Cone19ag0496 490 MobiDBLite consensus disorder prediction 159 201 - -
Cone19ag0496 490 SUPERFAMILY Leucine zipper domain 198 240 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0496 490 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 196 240 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0496 490 ProSiteProfiles DOG1 domain profile. 272 486 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone19ag0496 490 Gene3D - 197 246 - -
Cone19ag0496 490 SMART brlzneu 194 281 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0496 490 MobiDBLite consensus disorder prediction 179 193 - -
Cone19ag0496 490 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 201 216 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0496 490 Coils Coil 9 29 - -
Cone19ag0496 490 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0496 Cone-Chr19:4105973 Cone5ag0986 Cone-Chr5:4227304 2.75E-115 dispersed
Cone10ag0067 Cone-Chr10:388728 Cone19ag0496 Cone-Chr19:4105973 8.03E-183 wgd
Cone13ag0546 Cone-Chr13:5710710 Cone19ag0496 Cone-Chr19:4105973 5.18E-292 wgd
Cone19ag0496 Cone-Chr19:4105973 Cone3ag0081 Cone-Chr3:472652 1.41E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45303 PF00091 Tubulin 5.40E-68 CL0566 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0496 K14431 - rcu:8277515 615.15