Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0509 ATGGCGGACCCTTACACAAATTTCTTTGCAAATCTCTTCAAATTCAATTATCTCCACCGTCACGGCCGGCCGCCGGCATCGAACCCTCCTCCTCCCCCACCACCTCAATATCATCTCCACAACTTCTTCAACACAAACCATCATGACCAGCAAAATAATAATCACATCAACTCTCATAATAATTTTCCCTATAATTATTACAACCAAATCAGTAGTACTGCCGCTCCTAATTCTCCTCCTCTCAAACAAGCCCTACCCCTTTTAAGCCTCAGTCCGACAAAGCAATCGCAAGATCTAAACGGACAAACGGAAGAAGAAGATCTTCGAGAAGATCATGATATCGATCAGGATGAAGATCGTGAAGAGGAGGATGATGTTAATTCTGTGACAATAGCTCTTCATATAGGGTTACCGAGCCCTAGTGCTAGTGAAATGGCGTCTGTGCTGTCTGCTAATTCATCTAATAACTCTAATCACGATCGGATCAATGAAAAATTAGATCATGGTGATGATTCTGATCAGTGCAGTATGATGAGTAGGCTCAACAAGGGGCAGTATTGGATCCCTACCCCTTCTCAGATTCTAATTGGCCCCACTCAGTTTTCATGCCCTGTTTGCTTCAAGACCTTCAATAGATATAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGACCAGAATCTCTAAGAGGAACACAGCCAACAGGAATGCTTAGGCTTCCATGCTATTGCTGTGCGCCAGGTTGTAGGAACAACATAGACCATCCAAGAGCAAAACAACTTAAAGATTTCAGGACCCTTCAAACACATTACAAGAGAAAGCACGGAATGAAGCCCTTCATGTGTAGGAAATGTGGCAAGGCATTTGCAGTGAGAGGGGATTGGAGAACGCACGAGAAGAATTGTGGGAAGCTTTGGTATTGTACTTGTGGGTCTGATTTTAAGCATAAGAGGTCTCTTAAAGATCATGTCAAGGCTTTCGGAAATGGCCATGAGGCTTATAGTACTACTACTGCTACTACATCTAGTGTTCATGATCATGGGTTCGAGGAAGAAGAAGACGACCCCGCATCCGAAGTTGAACAAGACGACGATCCATCCGTGCGGTGA 1125 44.0 MADPYTNFFANLFKFNYLHRHGRPPASNPPPPPPPQYHLHNFFNTNHHDQQNNNHINSHNNFPYNYYNQISSTAAPNSPPLKQALPLLSLSPTKQSQDLNGQTEEEDLREDHDIDQDEDREEEDDVNSVTIALHIGLPSPSASEMASVLSANSSNNSNHDRINEKLDHGDDSDQCSMMSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKQLKDFRTLQTHYKRKHGMKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHVKAFGNGHEAYSTTTATTSSVHDHGFEEEEDDPASEVEQDDDPSVR 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4187739 4190197 + Conep19aG0052700.1 Cone19ag0509 458946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0509 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 285 305 IPR013087 -
Cone19ag0509 374 MobiDBLite consensus disorder prediction 39 60 - -
Cone19ag0509 374 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 284 308 - -
Cone19ag0509 374 FunFam Zinc finger protein WIP2 254 336 - -
Cone19ag0509 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 201 228 IPR013087 -
Cone19ag0509 374 SUPERFAMILY beta-beta-alpha zinc fingers 192 223 IPR036236 -
Cone19ag0509 374 MobiDBLite consensus disorder prediction 342 374 - -
Cone19ag0509 374 SUPERFAMILY beta-beta-alpha zinc fingers 266 305 IPR036236 -
Cone19ag0509 374 Gene3D Classic Zinc Finger 200 223 - -
Cone19ag0509 374 ProSitePatterns Zinc finger C2H2 type domain signature. 203 223 IPR013087 -
Cone19ag0509 374 PANTHER ZINC FINGER PROTEIN WIP2 56 370 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Cone19ag0509 374 Gene3D Classic Zinc Finger 261 342 - -
Cone19ag0509 374 MobiDBLite consensus disorder prediction 92 125 - -
Cone19ag0509 374 MobiDBLite consensus disorder prediction 21 60 - -
Cone19ag0509 374 FunFam zinc finger protein WIP2-like 200 223 - -
Cone19ag0509 374 MobiDBLite consensus disorder prediction 108 125 - -
Cone19ag0509 374 MobiDBLite consensus disorder prediction 24 38 - -
Cone19ag0509 374 SMART c2h2final6 247 280 IPR013087 -
Cone19ag0509 374 SMART c2h2final6 201 223 IPR013087 -
Cone19ag0509 374 SMART c2h2final6 285 305 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0509 Cone-Chr19:4187739 Cone6ag0465 Cone-Chr6:2295739 1.13E-103 dispersed
Cone10ag0055 Cone-Chr10:333471 Cone19ag0509 Cone-Chr19:4187739 6.78E-147 wgd
Cone19ag0509 Cone-Chr19:4187739 Cone3ag0068 Cone-Chr3:407244 1.46E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45304 PF13921 Myb_DNA-bind_6 1.50E-17 CL0123 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0509 - - - 0.0