Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0512 ATGGAAGATTTCAGAAAATCCCCGTTAAAGCCATGGAAGAAAGGGCCCACAAGAGGCAAAGGCGGGCCACTGAATGCATCTTGCGAATACCGAGGAGTTAGACAAAGAACGTGGGGCAAATGGGTGGCTGAGATCAGAGAGCCCAAGAAGAGAACTAGGCTCTGGCTCGGCTCATTTGCCACAGCTGAAGAAGCCGCCATGGCTTACGACGAGGCGGCAAGAAGACTATATGGACCAGAAGCTTACCTCAATCTCCCCCACCTTCAACCCAGCTTACTTTCTCCAATCAAACCACATAAATATAAATGGTTCCCTTCAAAGAATTTCGTTTCCATGTTTCCCTCTTGTGGGTTGCTCAACATAAATGCCCAGCCTAGTGTTCATGTGATTCATCAGAGGCTCCAAGAACTTAAGCAAAACGGGGTTCTTAATCAAACCCCTTGCTCTAGTTCTTCATCTTCCTGTGATTCAAAACCTGAAATGCTGATTATGAATAACAAACAGCCCAGTATAGAAAATCAAGTAAATAAAGAGAAGGATGGGGAGATTTCATCTGAGACTATGCTAAGAACTGTTGAAGAAAAGCCTCAGATTGACCTGAATGAATTTCTTCAGCAGCTGGGAATATTGAAAGACGAGAGTCGATCGTCAGAAGCTGGTGCCATGGAAAGTTCTATGGAATTACAGTCTTCAATACAGGATTGTGGAGATGAGCTTGGAACCTTCACTGAGCAGAATTTCAACTGGGATGCAGTTATTGAGATGCATGGACTTGCTGAACAGGGAGGAGATATTGGTAACTTCCAAGTTTATGATTTCAATGAAGAGCTGACTTTTCATACTTCCCTTTGGAACTTCTAA 861 43.79 MEDFRKSPLKPWKKGPTRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPEAYLNLPHLQPSLLSPIKPHKYKWFPSKNFVSMFPSCGLLNINAQPSVHVIHQRLQELKQNGVLNQTPCSSSSSSCDSKPEMLIMNNKQPSIENQVNKEKDGEISSETMLRTVEEKPQIDLNEFLQQLGILKDESRSSEAGAMESSMELQSSIQDCGDELGTFTEQNFNWDAVIEMHGLAEQGGDIGNFQVYDFNEELTFHTSLWNF 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4223952 4225052 - Conep19aG0053000.1 Cone19ag0512 458949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0512 286 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0512 286 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 232 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cone19ag0512 286 MobiDBLite consensus disorder prediction 1 26 - -
Cone19ag0512 286 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677(InterPro)
Cone19ag0512 286 SMART rav1_2 29 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0512 286 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Cone19ag0512 286 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0512 286 Pfam AP2 domain 29 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0512 286 CDD AP2 28 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0512 286 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0512 286 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1201 Cone-Chr11:9087140 Cone19ag0512 Cone-Chr19:4223952 3.17E-23 dispersed
Cone18ag0387 Cone-Chr18:1880205 Cone19ag0512 Cone-Chr19:4223952 5.57E-23 dispersed
Cone19ag0512 Cone-Chr19:4223952 Cone4ag1944 Cone-Chr4:13710209 4.22E-30 dispersed
Cone19ag0512 Cone-Chr19:4223952 Cone7ag1858 Cone-Chr7:12016591 1.99E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45305 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0512 - - - 0.0