Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone19ag0512 | ATGGAAGATTTCAGAAAATCCCCGTTAAAGCCATGGAAGAAAGGGCCCACAAGAGGCAAAGGCGGGCCACTGAATGCATCTTGCGAATACCGAGGAGTTAGACAAAGAACGTGGGGCAAATGGGTGGCTGAGATCAGAGAGCCCAAGAAGAGAACTAGGCTCTGGCTCGGCTCATTTGCCACAGCTGAAGAAGCCGCCATGGCTTACGACGAGGCGGCAAGAAGACTATATGGACCAGAAGCTTACCTCAATCTCCCCCACCTTCAACCCAGCTTACTTTCTCCAATCAAACCACATAAATATAAATGGTTCCCTTCAAAGAATTTCGTTTCCATGTTTCCCTCTTGTGGGTTGCTCAACATAAATGCCCAGCCTAGTGTTCATGTGATTCATCAGAGGCTCCAAGAACTTAAGCAAAACGGGGTTCTTAATCAAACCCCTTGCTCTAGTTCTTCATCTTCCTGTGATTCAAAACCTGAAATGCTGATTATGAATAACAAACAGCCCAGTATAGAAAATCAAGTAAATAAAGAGAAGGATGGGGAGATTTCATCTGAGACTATGCTAAGAACTGTTGAAGAAAAGCCTCAGATTGACCTGAATGAATTTCTTCAGCAGCTGGGAATATTGAAAGACGAGAGTCGATCGTCAGAAGCTGGTGCCATGGAAAGTTCTATGGAATTACAGTCTTCAATACAGGATTGTGGAGATGAGCTTGGAACCTTCACTGAGCAGAATTTCAACTGGGATGCAGTTATTGAGATGCATGGACTTGCTGAACAGGGAGGAGATATTGGTAACTTCCAAGTTTATGATTTCAATGAAGAGCTGACTTTTCATACTTCCCTTTGGAACTTCTAA | 861 | 43.79 | MEDFRKSPLKPWKKGPTRGKGGPLNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPEAYLNLPHLQPSLLSPIKPHKYKWFPSKNFVSMFPSCGLLNINAQPSVHVIHQRLQELKQNGVLNQTPCSSSSSSCDSKPEMLIMNNKQPSIENQVNKEKDGEISSETMLRTVEEKPQIDLNEFLQQLGILKDESRSSEAGAMESSMELQSSIQDCGDELGTFTEQNFNWDAVIEMHGLAEQGGDIGNFQVYDFNEELTFHTSLWNF | 286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 4223952 | 4225052 | - | Conep19aG0053000.1 | Cone19ag0512 | 458949 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone19ag0512 | 286 | ProSiteProfiles | AP2/ERF domain profile. | 29 | 86 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag0512 | 286 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 5 | 232 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Cone19ag0512 | 286 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cone19ag0512 | 286 | SUPERFAMILY | DNA-binding domain | 29 | 87 | IPR016177 | GO:0003677(InterPro) | |
Cone19ag0512 | 286 | SMART | rav1_2 | 29 | 92 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag0512 | 286 | FunFam | Ethylene-responsive transcription factor 2 | 28 | 87 | - | - | |
Cone19ag0512 | 286 | Gene3D | AP2/ERF domain | 29 | 87 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag0512 | 286 | Pfam | AP2 domain | 29 | 78 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag0512 | 286 | CDD | AP2 | 28 | 88 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag0512 | 286 | PRINTS | Ethylene responsive element binding protein signature | 30 | 41 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag0512 | 286 | PRINTS | Ethylene responsive element binding protein signature | 52 | 68 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag1201 | Cone-Chr11:9087140 | Cone19ag0512 | Cone-Chr19:4223952 | 3.17E-23 | dispersed | |
Cone18ag0387 | Cone-Chr18:1880205 | Cone19ag0512 | Cone-Chr19:4223952 | 5.57E-23 | dispersed | |
Cone19ag0512 | Cone-Chr19:4223952 | Cone4ag1944 | Cone-Chr4:13710209 | 4.22E-30 | dispersed | |
Cone19ag0512 | Cone-Chr19:4223952 | Cone7ag1858 | Cone-Chr7:12016591 | 1.99E-31 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45305 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone19ag0512 | - | - | - | 0.0 |