Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0515 ATGAATAACTTGACCGTTGAAACTGAAGATGCTTTTTCCAGCTTGCTAGAACTTGCTGCCAATGATGACATTGAGGGATTCAGGGCATCAGTTGAGCGGGATCCATCTGGTATCGATGAGATTGGTCTTTGGTATGGTCGGCAAAAGGGCTCCAAGCAGATGGTTAATCAGCATAGAACTCCTTTAATGGTTGCTGCTACATATGGTAGCATTGAAATTATGAAGCTGATTCTTTCTTTGTCTGAATCCAATGTAAATCGTTCTGTTGGACTTGACAAAAGCACTGCCCTCCACTGTGCAGCCTCAGGTGGAGCTGTGAATGCTATTGAGGTTGTGAAACTGCTGTTAACAGCGGGTGCCGATCCAAATTTGGTGGATGGTAATGGAGATCGTCCTGTTGATGTTATCGTCATTCCTCCTAAGCTTCAAGATGTCAGATTAACTCTTGAAGCGCTGCTATCAACAAATGATTCTTCTGGTGAATTCCATTCAATAGTTTCAGGGAATTTCAATTCAGATTCTCCTCCTCTTCCAGCATCCCCTCAAAACGGTTCTTTCTCTAGTTCAGAAATAGTTTCCTCACCGACGAGGTCCAAGTTTAGTGATTTCCCTCTATCTTTTGCATCAGAGAAGAAAGAATATCCTGTTGACCCATCCCTCCCAGACATTAAGAACAGCATTTACTCAACTGATGAGTTTAGGATGTATTCATTTAAGGTGCGACCTTGCTCACGTGCCTACTCTCATGATTGGACTGAGTGCCCTTTTGTCCATCCCGGAGAAAATGCTCGAAGGAGGGATCCAAGGAAGTTCCATTACAGCTGTGTTCCTTGTCCAGATTTCCGGAAGGGGGCTTGTAGACGAGGAGATATGTGTGAATATGCCCATGGAGTTTTTGAGTGTTGGCTTCACCCAGCACAATATAGAACTCGACTTTGCAAGGATGGTACAAGCTGTGCAAGGAGAGTCTGCTTCTTTGCCCACACTACGGAAGAACTCCGCCCATTGTATGTTTCAACAGGTTCTGCTGTCCCTTCTCCTCGTAGTGGTGCTTCCAGCGCTGCTGCAATGGATTATGCAGCTGCTATGAACCTCTTACCTGGTTCTCCATCTTCAATGTCTGTCATGTCTCCTTCACCGTTCACTCCTCCTTTATCTCCATCTGCCAATGGCATGTCACACTCTTCCATGGCTTGGCCTCAACCAAATGTCCCAGCCTTGCATCTTCCTGGAAGCAATCTACAATCCAGTCGCCTGAGATCTTCCCTGAATGCAAGAGACATTCCAGTTGACGTGCATCAACAACAACTTCTAAATGAATTTTCCTCTCTTTCCCAACCGTCTTTAAGTTCCAATGGTTTGGGTCGATCTGGTCGAATGAAAATTCTAACACCCTCAAATCTTGATGATCTCTTTTCTGCTGAAAGTTCATCTCCCCGTTACTCTGATCAGGCACTGGCTTCTACTGTTTTCTCTCCAACACATAAATCTGCCCTTCTCAATCAATTTCAACAGCAGCAGAGTATGTTATCACCGATAAACACAAACTACTCTCCAAAAAATGTTGACCACCCTTTATTGCAGGCTTCTTTTGGGGTTCCATCTTCTGGCAGAATGTCTCCTAGAAATGTGGAACCCATCTCACCATTAAGCTCTAGAATGTCTATGTTAGCTCAGCGAGAGAAGCAGCAACAATTTCGGAGCCTCATTTCAAGTGAGCTTGGTTCCAATTCATCGACACTGGCTATGGGCTCTCAGATAAGTCCTTGGTCCAAATGGGGATCTTCTAATGGACCGGCTGATTGGACTGTTAATGCAGATGAATTTGGTAAGCTTCGTTGCTCTTCTTCATTTGACCTTGGGAACAATGGGGAAGAGCCCGACTTATCATGGGTCCAATCACTTGTTAGAGAATCTCCAACAGAGTTGAAAGAGAAGCTAGCACCACCACAACCACCACCACAGCCTCCTCCACCACCACCTACATCAGGTGGTATGAACACTGTTTCCTCCAGTGAGACTTCTAATATGAACTCCCAGATGGAAGCAGTAGATCATGCAGTTTTGGGGGCATGGCTTGAAAAAATGCAACTGGATCATCTCGTTGCTCAGCAAAACTGA 2121 45.07 MNNLTVETEDAFSSLLELAANDDIEGFRASVERDPSGIDEIGLWYGRQKGSKQMVNQHRTPLMVAATYGSIEIMKLILSLSESNVNRSVGLDKSTALHCAASGGAVNAIEVVKLLLTAGADPNLVDGNGDRPVDVIVIPPKLQDVRLTLEALLSTNDSSGEFHSIVSGNFNSDSPPLPASPQNGSFSSSEIVSSPTRSKFSDFPLSFASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCARRVCFFAHTTEELRPLYVSTGSAVPSPRSGASSAAAMDYAAAMNLLPGSPSSMSVMSPSPFTPPLSPSANGMSHSSMAWPQPNVPALHLPGSNLQSSRLRSSLNARDIPVDVHQQQLLNEFSSLSQPSLSSNGLGRSGRMKILTPSNLDDLFSAESSSPRYSDQALASTVFSPTHKSALLNQFQQQQSMLSPINTNYSPKNVDHPLLQASFGVPSSGRMSPRNVEPISPLSSRMSMLAQREKQQQFRSLISSELGSNSSTLAMGSQISPWSKWGSSNGPADWTVNADEFGKLRCSSSFDLGNNGEEPDLSWVQSLVRESPTELKEKLAPPQPPPQPPPPPPTSGGMNTVSSSETSNMNSQMEAVDHAVLGAWLEKMQLDHLVAQQN 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4239380 4243223 - Conep19aG0053300.1 Cone19ag0515 458952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0515 706 Gene3D - 273 335 - -
Cone19ag0515 706 MobiDBLite consensus disorder prediction 637 682 - -
Cone19ag0515 706 SMART c3hfinal6 307 330 IPR000571 GO:0046872(InterPro)
Cone19ag0515 706 SMART c3hfinal6 272 298 IPR000571 GO:0046872(InterPro)
Cone19ag0515 706 SMART ANK_2a 92 124 IPR002110 GO:0005515(InterPro)
Cone19ag0515 706 SMART ANK_2a 57 87 IPR002110 GO:0005515(InterPro)
Cone19ag0515 706 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515(InterPro)
Cone19ag0515 706 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515(InterPro)
Cone19ag0515 706 MobiDBLite consensus disorder prediction 646 664 - -
Cone19ag0515 706 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Cone19ag0515 706 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872(InterPro)
Cone19ag0515 706 SUPERFAMILY Ankyrin repeat 56 150 IPR036770 -
Cone19ag0515 706 PANTHER UNKEMPT FAMILY MEMBER 42 640 IPR045234 -
Cone19ag0515 706 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515(InterPro)
Cone19ag0515 706 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
Cone19ag0515 706 Gene3D - 4 150 IPR036770 -
Cone19ag0515 706 Pfam Ankyrin repeats (3 copies) 57 126 IPR002110 GO:0005515(InterPro)
Cone19ag0515 706 MobiDBLite consensus disorder prediction 665 682 - -
Cone19ag0515 706 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 297 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0358 Cone-Chr18:1739191 Cone19ag0515 Cone-Chr19:4239380 0.00E+00 dispersed
Cone19ag0515 Cone-Chr19:4239380 Cone5ag1074 Cone-Chr5:4765337 9.08E-147 dispersed
Cone10ag0050 Cone-Chr10:310015 Cone19ag0515 Cone-Chr19:4239380 0 wgd
Cone13ag0563 Cone-Chr13:5816285 Cone19ag0515 Cone-Chr19:4239380 0 wgd
Cone19ag0515 Cone-Chr19:4239380 Cone3ag0063 Cone-Chr3:379515 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45306 PF02171 Piwi 5.00E-116 CL0219 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0515 - - - 0.0