Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0521 ATGGGAACGCCAGAATTCCCAGATCTCGGGAAGCATTGTTCCCTCCAGGATTGCAATCAGATCGATTTCTTACCCTTCAAATGTGATTGTTGCTTCCAGGTTTTATGTTTGGAGCATCGAAGCTACATCAAACACAATTGCCCGAAAGGCAACAAACATGACATTACGGTTGTAGTCTGCCCGCTTTGTGCCAAAGGAGTCCGGCTTAATCCGGACGAAAATGCGAACATCACATGGGAGATGCATGTTAATTTTGAATGCGACCCGTCAAATTATGAGAAAGCTACAAAGAAGAAAAAATGCCCCGTCCTGCGATGCAAGGAAGCTCTAACCTTTTCAAATACGATCAAATGCAGAGACTGCTCGATGGAGCATTGTTTAAAGCACCGCTTTGGACCCGACCATAACTGTCCGAGACATAAAGAACAAGTACAAGGTATTGTGAGTAGGAGTTGTAGGCCTAACCAACTGTCATTCGGCTCATCGACATCAAATTCGCTTGAATGGGCAAAGAGCATTTTTTATGCAGCATCGTCTTTTCGACGCATAATGGCAAGGGAGACAGAGAAGTGCCAACAATGTGGTGCTAAGTTTTGTACGGTAGCTGATTTGGTTGAGCATGCGAAGAAGGTTCATGAACGGAGTGGGTCCCAAACCGGGGGGAAGACGATGAAAAAGGTGATGATTGATCCTTGTCCGAAGTGTAGTAGAGGGTTTCTTGATCCGGCTTCTCTTGTTGAGCATATTGAGAGGGATCATGGGGGTACATCTAAAGCTTAA 780 45.26 MGTPEFPDLGKHCSLQDCNQIDFLPFKCDCCFQVLCLEHRSYIKHNCPKGNKHDITVVVCPLCAKGVRLNPDENANITWEMHVNFECDPSNYEKATKKKKCPVLRCKEALTFSNTIKCRDCSMEHCLKHRFGPDHNCPRHKEQVQGIVSRSCRPNQLSFGSSTSNSLEWAKSIFYAASSFRRIMARETEKCQQCGAKFCTVADLVEHAKKVHERSGSQTGGKTMKKVMIDPCPKCSRGFLDPASLVEHIERDHGGTSKA 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4281234 4282270 + Conep19aG0053900.1 Cone19ag0521 458958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0521 259 ProSitePatterns Zinc finger C2H2 type domain signature. 191 212 IPR013087 -
Cone19ag0521 259 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270(InterPro)
Cone19ag0521 259 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270(InterPro)
Cone19ag0521 259 ProSitePatterns Zinc finger C2H2 type domain signature. 232 253 IPR013087 -
Cone19ag0521 259 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270(InterPro)
Cone19ag0521 259 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
Cone19ag0521 259 Gene3D Classic Zinc Finger 162 256 - -
Cone19ag0521 259 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270(InterPro)
Cone19ag0521 259 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270(InterPro)
Cone19ag0521 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 217 IPR013087 -
Cone19ag0521 259 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270(InterPro)
Cone19ag0521 259 Gene3D - 82 154 IPR035896 -
Cone19ag0521 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 258 IPR013087 -
Cone19ag0521 259 Gene3D - 2 56 IPR035896 -
Cone19ag0521 259 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 147 - GO:0005737(PANTHER)
Cone19ag0521 259 SUPERFAMILY AN1-like Zinc finger 86 141 IPR035896 -
Cone19ag0521 259 SMART c2h2final6 230 253 IPR013087 -
Cone19ag0521 259 SMART c2h2final6 189 212 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0133 Cone-Chr11:598956 Cone19ag0521 Cone-Chr19:4281234 9.54E-41 dispersed
Cone19ag0521 Cone-Chr19:4281234 Cone3ag0060 Cone-Chr3:357139 1.84E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45307 PF00581 Rhodanese 4.90E-05 CL0031 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0521 - - - 0.0