Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0534 ATGGCTTCGTCTTCTTCTGATCCTGGTTTGAAGCAAGAAATTGGTAGCAGTAGCGGTTGTGGCGATGGAGGAGGAGGTAGAGAAGTTTCAGATGCTTTGATGCCTAGCGATCAGCTATTTTTGTACAGAGGGTTGAAGAAGGCGAAGAAAGACAGAGGCTGTACAGCCAAGGAGCGCATCAGCAAAATGCCACCATGTGCTGCCGGGAAACGGAGCTCCATTTACCGCGGAGTTACCAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAAAGCACCTGGAATCAGAACCAGAATAAAAAGGGAAAGCAAGGTGCATATGATGAGGAGGAGGCGGCAGCTAGGGCATATGATCTTGCTGCTTTGAAATATTGGGGCCCTGGGACACTCATCAATTTTCCAGTTACTGATTATGCGAGAGACCTTGAAGAGATGCAAAATCTATCACGAGAGGAGTACCTTGCATCATTAAGAAGAAAGAGCAGCGGGTTCTCAAGAGGAATCTCTAAATATCGTGGCCTATCTAGTAGATGGGATGCACCGTTTGGTCGAATGACTGGAGCAGAGTACTTCAACAGCAATAATTATAGTACAGGAGAGGATCCAACAGCAGAAAGTGAATTTGTAAATAGATTCTGCATTGAAAGAAAGATTGACTTAACAAGTTACATCAAGTGGTGGGGCCCAAACAAAACCCGTCAAGTAGATGGTAGTTTAAAATCATCAGAAGATGCCAATCATGGTAGCGCTGCAGATTTTGCATCTGAAGTTAAGGCACTAGAATGGGCAACCAGGCACACAGAGCCATATGAGATGCCTCAATTGGGCACTTACAATGAAGGAAAGAAGAAGCATAAAAGCTCCAGGGTCTCTGCCTTGAGCATCTTGTCACGCTCTGCTGCCTATAAGAGCTTCCAAGAGAAAGCATCGAAGAAACAAGAAGACAACAATGAAAATGATGAGAATGAAAACAAGAATACAATCAAGAAGATGGATTATGGGAAGGCAGTTGAGAAACCTACAAGTCATGATCATGGATGTGATGAGAGATTTGGAGTTGGGTTAGGATCGAGCGGTGGGGGTTTGACTCTTCAGAGAAATATGTTCCCATTGACTCCTTTCTTGTCGGGCCCACTTTTGACAAGCTACAACACTGTTGATTCCTTGGTGGACCCCATTCTTTGGACATCTCTTGTTCCTGTTCTTCCTACCGAACTTTCCCGTGCAGCTGAGGTTGAAGACAGAGACAACGTCAACTAA 1269 44.84 MASSSSDPGLKQEIGSSSGCGDGGGGREVSDALMPSDQLFLYRGLKKAKKDRGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYARDLEEMQNLSREEYLASLRRKSSGFSRGISKYRGLSSRWDAPFGRMTGAEYFNSNNYSTGEDPTAESEFVNRFCIERKIDLTSYIKWWGPNKTRQVDGSLKSSEDANHGSAADFASEVKALEWATRHTEPYEMPQLGTYNEGKKKHKSSRVSALSILSRSAAYKSFQEKASKKQEDNNENDENENKNTIKKMDYGKAVEKPTSHDHGCDERFGVGLGSSGGGLTLQRNMFPLTPFLSGPLLTSYNTVDSLVDPILWTSLVPVLPTELSRAAEVEDRDNVN 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4366127 4369085 + Conep19aG0055200.1 Cone19ag0534 458971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0534 422 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 58 285 - -
Cone19ag0534 422 SUPERFAMILY DNA-binding domain 73 138 IPR016177 GO:0003677(InterPro)
Cone19ag0534 422 FunFam AP2-like ethylene-responsive transcription factor 73 139 - -
Cone19ag0534 422 MobiDBLite consensus disorder prediction 1 32 - -
Cone19ag0534 422 MobiDBLite consensus disorder prediction 309 336 - -
Cone19ag0534 422 Gene3D AP2/ERF domain 74 139 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0534 422 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0534 422 PRINTS Ethylene responsive element binding protein signature 119 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0534 422 ProSiteProfiles AP2/ERF domain profile. 74 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0534 422 SMART rav1_2 74 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0534 422 Coils Coil 313 333 - -
Cone19ag0534 422 Pfam AP2 domain 75 129 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0534 Cone-Chr19:4366127 Cone20ag1123 Cone-Chr20:7687688 1.98E-60 dispersed
Cone13ag0577 Cone-Chr13:6005729 Cone19ag0534 Cone-Chr19:4366127 2.21E-272 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45308 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0534 K09285 - cit:102624476 598.586