Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0548 ATGGCTGCCGAGTCACAGTTTCATGTCTTAGCCGTCGATGATAGCCTTATTGACAGAAAGCTTATCGAAATGCTCCTTAAAACCTCTTCATATCAAGTTACTACCGTTGATTCTGGTAGCAAGGCTTTAGAATTTCTGGGTTTGTATGAAGATGAACAAAGCAATCCAAATACACCCTCTGTTTCTCCAAACAATCATCATGATGTGGAAGTGAATCTTATAATTACAGATTATTGTATGCCTGGCATGACAGGCTATGATCTGCTCAAGAAAATTAAGGAATCATCATCTTTCAGAAACGTACCTGTAGTGATCATGTCATCTGAAAATGTGCCTTCTAGGATCAACAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCAGTTAGATTATCTGATGTGATTAAGCTAAAACCTCATATGATGAAATCCAAGTTCATGAATCAAAAAAATGAAAATCAAGGAAGACCAAAAGATAAAGGAGAAGAAGATTCAGAAAAACAAAGCTGTCAAGTAGAAGAACAGCAACCATTGCTACAGCAACAGTGCAATAATAACAATAATACTAATGGTAATAGTAATAAAAGGAAGGCCATGGAAGAGGGTCTCTCTTTATCACCTGATAGAACAAGAACCAGAAGATTTAATGATCTCACCACTGTAAACTGA 675 36.59 MAAESQFHVLAVDDSLIDRKLIEMLLKTSSYQVTTVDSGSKALEFLGLYEDEQSNPNTPSVSPNNHHDVEVNLIITDYCMPGMTGYDLLKKIKESSSFRNVPVVIMSSENVPSRINRCLEEGAEEFFLKPVRLSDVIKLKPHMMKSKFMNQKNENQGRPKDKGEEDSEKQSCQVEEQQPLLQQQCNNNNNTNGNSNKRKAMEEGLSLSPDRTRTRRFNDLTTVN 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4566224 4567594 + Conep19aG0056600.1 Cone19ag0548 458985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0548 224 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 215 IPR045279 GO:0009736(InterPro)
Cone19ag0548 224 MobiDBLite consensus disorder prediction 144 224 - -
Cone19ag0548 224 ProSiteProfiles Response regulatory domain profile. 8 144 IPR001789 GO:0000160(InterPro)
Cone19ag0548 224 CDD REC_typeA_ARR 9 139 - -
Cone19ag0548 224 MobiDBLite consensus disorder prediction 173 201 - -
Cone19ag0548 224 Gene3D - 8 216 - -
Cone19ag0548 224 Pfam Response regulator receiver domain 9 137 IPR001789 GO:0000160(InterPro)
Cone19ag0548 224 SMART REC_2 7 140 IPR001789 GO:0000160(InterPro)
Cone19ag0548 224 MobiDBLite consensus disorder prediction 203 217 - -
Cone19ag0548 224 SUPERFAMILY CheY-like 6 149 IPR011006 -
Cone19ag0548 224 MobiDBLite consensus disorder prediction 154 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1286 Cone-Chr17:9221135 Cone19ag0548 Cone-Chr19:4566224 2.03E-54 dispersed
Cone19ag0548 Cone-Chr19:4566224 Cone7ag0062 Cone-Chr7:273575 2.53E-69 dispersed
Cone13ag0617 Cone-Chr13:6253790 Cone19ag0548 Cone-Chr19:4566224 2.55E-116 wgd
Cone19ag0548 Cone-Chr19:4566224 Cone3ag0023 Cone-Chr3:145504 2.61E-66 wgd
Cone19ag0548 Cone-Chr19:4566224 Cone3ag0023 Cone-Chr3:145504 2.61E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45310 PF03031 NIF 6.60E-27 CL0137 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0548 K14492 - vvi:100243627 281.567