Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0634 ATGATGCAGCCGACTGATCAGAACTCATCAGAGCTATATAGATTCTTGGCCCAAAACGGTGTGTTTAATCACGTCGGTGATCAGTATGGTACTAGGAGTAATAGTATTCCGGCCATGACTACTATGCACAGGCAGAGCCATTGTAGTAGCTCGAGTACTAGTTCATACAATTACCCCTTGGAGTTGTCTGGAATTACGGCGGAGCCACCGCCGCCAATATCTGGTAGCCATGATAGAGCTCTCGCTGCTTTGAAGAATCACAAGGAGGCCGAGAAGCGGCGGAGGGAAAGAATTAACGGCCACCTCCATAAGCTTCGCAATCTTCTTCCTTGTAATTCTAAGACAGACAAAGCTTCGCTACTTGCAAAGGTTGTTCAACGTGTGAAGGAGCTAAAGCAGAAAGCCTTGGAAATCACGGAGATGGAAACATTCCCATCAGAAACAGATGAAATCAGTGTCATGTCAGGTGATTATTCGAGCGATGGAAGATTGATATTCAAGGCCTCATTGTGCTGTGAGGATCGGACAGACCTGATTCCAGACCTAATCGAAATACTAAACTCTCTCCACTTGAAGACCTTGAGAGCAGAAATGGCAACTCTCGGTGGAAGAATCCGCAACGTTCTTATCATTGCTGCCGATAAGGATCACAGCATCGAGGCCGTTCACTTCTTGCAAAACGCCTTGAAATCTTTGGTGGAACGATCAAATTCTAATGATCGATCGAAGAGCCGCCGCGTGTTTGACTGTAAAATGTTTGTCCAATAA 768 45.83 MMQPTDQNSSELYRFLAQNGVFNHVGDQYGTRSNSIPAMTTMHRQSHCSSSSTSSYNYPLELSGITAEPPPPISGSHDRALAALKNHKEAEKRRRERINGHLHKLRNLLPCNSKTDKASLLAKVVQRVKELKQKALEITEMETFPSETDEISVMSGDYSSDGRLIFKASLCCEDRTDLIPDLIEILNSLHLKTLRAEMATLGGRIRNVLIIAADKDHSIEAVHFLQNALKSLVERSNSNDRSKSRRVFDCKMFVQ 255
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
19 5476327 5477838 - Conep19aG0065500.1 Cone19ag0634 459071
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0634 255 Coils Coil 121 141 - -
Cone19ag0634 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 82 131 IPR011598 GO:0046983(InterPro)
Cone19ag0634 255 Pfam Helix-loop-helix DNA-binding domain 86 132 IPR011598 GO:0046983(InterPro)
Cone19ag0634 255 FunFam transcription factor bHLH30 77 140 - -
Cone19ag0634 255 CDD bHLH_AtAIG1_like 78 153 - -
Cone19ag0634 255 SMART finulus 88 137 IPR011598 GO:0046983(InterPro)
Cone19ag0634 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 141 IPR036638 GO:0046983(InterPro)
Cone19ag0634 255 Gene3D - 78 142 IPR036638 GO:0046983(InterPro)
Cone19ag0634 255 PANTHER TRANSCRIPTION FACTOR BHLH30 38 249 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0629 Cone-Chr13:6384985 Cone19ag0634 Cone-Chr19:5476327 1.84E-161 dispersed
Cone19ag0634 Cone-Chr19:5476327 Cone9ag0488 Cone-Chr9:2328217 7.75E-48 dispersed
Cone19ag0634 Cone-Chr19:5476327 Cone6ag0475 Cone-Chr6:2343077 3.79E-49 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45314 PF02913 FAD-oxidase_C 3.70E-68 CL0277 Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0634 - - - 0.0