Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0650 ATGGGGCTGCAAATTATGGAGCCAAACACCTGCATCAGAGGCTGCTGCTCAAGCAGCTCAATCCCGCTTCATCTCCTACCTTCTTCCTACACTCTTCTCTCCCCTATTGCTCGAGGGGCAGAGAGTGTTGTGTATGAAGGGAGGTTGAGTGGCAGAAAGGTCGCCATCAAGAAACCCATCCTGTCTACTTCTGAAGATTTGGACAAGTTCCATAAGCAGCTCCAACTGCTATGTAAATTAGATCATCCGGGTATAACAAAATTGGTTGCGGCTCACGCAAAGCCGCCTCATTACATGCTTTTCTTTGAGTACTATGAATCTCCTAACCTTGCTGAGAAATTACATGTTGAAGAGTGGAATCCAAGCGTTGATCAAGTGCTTGTTATTACTTACCAGCTAGCAAAAGCTTTGCAATATCTGCATAATATGGGGATTGTACATAGGGATGTGAAACCAGCAAACATTCTTCTAGACAGAGATTTGTTTCCCCACCTGACAGATTTTGGTTTGGCAGAATACCAGAAAGATCTAAAAGGAGTTTCTGTTGAAAACTGGAGATCATCTGGAAAGCCAACGGGCGGTTTTCATAAGAAAAATATGGTTGGGACACTCATTTATATGGCACCTGAAATATTAAGGAAGGAAGTTCATACAGAGAAATCAGATGTCTACAGTTTTGGCATTTCAATCAATGAGCTTCTTACTGGTGTTGTTCCATATACCGATCTTCGTGCGGAAGCTCAAGCTCACACTGTGCTAGAAATGAACTATACGGAACAGCAGCTTACAGTAGCTGTTGTTTCAAAAGGACTGAGACCAATTCTTGTTGGTGCCGAGTTTGAAACACCATCCAGTTTATTGTCTCTCATTCAAAAGTGCTGGAATAGGAACCCTCAAGATAGGCCATCTTTTGGAGAGATAGTTATGGAGATGGAGTCAATCTTGAAGCAAAGGAAGGATTCAGAGAAAGATTCTCTTGCTCTCACGGAGAACCTTGATGATGACAATGGAAAGTTCCATACTTATCAAGAGAGTATTAACTGGTCCAATCAAGGGGAAGATTTGTTCAGAAGAGATTCTTGCATGGAGAAGAGCTCTGGTAAGAAAATCTGGTCTGATTCCTTGTCTGATTCTTTGGGATACAAGCCCGTACTTTCTTGGGGATCATTTGCTACCTGTGGGAGAAGGGAAACTATGGAGGATACGCATTTCCTCATCCCTCATTTATCCAATGAAGAAGATGTCCATGTTTTTGGTATCTTTGATGGTCATAGAGGTGCAGCTGCTGCAGAGTTTTCAGCACAAGCTGTGCCTGGATTCTTGAAAACATCTGATTCCATGATAAGTCCAGCTGATGCATTATCAGAAGCATTCATTAAAACAGACATTGCATTTAGAAATGAACTTGATTCACATTGCAAATCCAAGAGAGTTATTCAGAAAGACTGGCATCCGGGTTGCACTGCCATTGTAGCCCTCATCGTTAAAAATGAGCTCTTTGTTGCAAATGCTGGTGATTGTAGGACGATTTTGTGTCGGGCAGGCCAGCCCGTTGCTTTAAGCAAGGATCATGTCGCCAGTTGCCTTGAGGAGAGGGAGCGTGTTATTGCTGCTGGTGGACTAGTCAAATGGCAAGTTGATACATGGAGAGTTGGTGCTGCTGCTCTTCAGGTCACTCGTTCAATTGGTGATGATGACCTGAAACCAACTGTAACAGCAGAACCCGAGATAACTGAAACTGTTTTGTCAGGGGATGATGACTATCTTGTGATGGCTAGTGATGGATTATGGGATGTAATGAGCAATTCAGAGGTAGTGAACATAGTTAGGGATACTGTAAAGGAGCCTGGAATGTGCTCTAAGAGATTAGCAACAGAAGCCGCGGAACGAGGAAGTAAAGATAATATAACAGTAATCGTCGTGTTCCTCCGCCCGGTATCCACGGCTGAGAGAATATACTAG 1962 43.27 MGLQIMEPNTCIRGCCSSSSIPLHLLPSSYTLLSPIARGAESVVYEGRLSGRKVAIKKPILSTSEDLDKFHKQLQLLCKLDHPGITKLVAAHAKPPHYMLFFEYYESPNLAEKLHVEEWNPSVDQVLVITYQLAKALQYLHNMGIVHRDVKPANILLDRDLFPHLTDFGLAEYQKDLKGVSVENWRSSGKPTGGFHKKNMVGTLIYMAPEILRKEVHTEKSDVYSFGISINELLTGVVPYTDLRAEAQAHTVLEMNYTEQQLTVAVVSKGLRPILVGAEFETPSSLLSLIQKCWNRNPQDRPSFGEIVMEMESILKQRKDSEKDSLALTENLDDDNGKFHTYQESINWSNQGEDLFRRDSCMEKSSGKKIWSDSLSDSLGYKPVLSWGSFATCGRRETMEDTHFLIPHLSNEEDVHVFGIFDGHRGAAAAEFSAQAVPGFLKTSDSMISPADALSEAFIKTDIAFRNELDSHCKSKRVIQKDWHPGCTAIVALIVKNELFVANAGDCRTILCRAGQPVALSKDHVASCLEERERVIAAGGLVKWQVDTWRVGAAALQVTRSIGDDDLKPTVTAEPEITETVLSGDDDYLVMASDGLWDVMSNSEVVNIVRDTVKEPGMCSKRLATEAAERGSKDNITVIVVFLRPVSTAERIY 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5557915 5561505 + Conep19aG0067100.1 Cone19ag0650 459087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0650 653 FunFam Protein kinase and PP2C-like domain-containing protein 20 344 - -
Cone19ag0650 653 Pfam Protein kinase domain 30 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0650 653 SUPERFAMILY Protein kinase-like (PK-like) 17 312 IPR011009 -
Cone19ag0650 653 PANTHER PROTEIN PHOSPHATASE 344 642 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone19ag0650 653 Gene3D Transferase(Phosphotransferase) domain 1 20 344 - -
Cone19ag0650 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0650 653 SMART PP2C_SIG_2 401 643 IPR001932 -
Cone19ag0650 653 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 377 647 - -
Cone19ag0650 653 SUPERFAMILY PP2C-like 379 645 IPR036457 -
Cone19ag0650 653 ProSiteProfiles PPM-type phosphatase domain profile. 386 643 IPR001932 -
Cone19ag0650 653 SMART PP2C_4 376 641 IPR001932 -
Cone19ag0650 653 ProSiteProfiles Protein kinase domain profile. 30 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0650 653 CDD PP2Cc 388 643 IPR001932 -
Cone19ag0650 653 SMART serkin_6 30 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0650 653 Gene3D - 378 648 IPR036457 -
Cone19ag0650 653 Pfam Protein phosphatase 2C 389 636 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0650 Cone-Chr19:5557915 Cone4ag1725 Cone-Chr4:12767565 1.62E-47 dispersed
Cone9ag1115 Cone-Chr9:7183955 Cone19ag0650 Cone-Chr19:5557915 1.68E-07 dispersed
Cone13ag0648 Cone-Chr13:6507536 Cone19ag0650 Cone-Chr19:5557915 5.12E-53 transposed
Cone13ag0647 Cone-Chr13:6506782 Cone19ag0650 Cone-Chr19:5557915 1.76E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82385 PF05470 eIF-3c_N 1.60E-246 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0650 - - - 0.0