Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0660 ATGGAGAAGACAACGACGACAACAGCGCCAACAGGGTGCTACAAGTGCGGCAGACCAGGCCATTGGTCACGTGACTGTCCGTCCTCTTCTGCTCCAAACCCTAACCCAACTTCTACTCCCCTCAGTTCCGCCAGGTCTTCCTCTTATGGCAGTGGCAATGGTGTTGCTTCAGATCCCGCTAAGAAGCCTAAGAAAGTACCTAGAACCAGAGCCAAGCTAACTCCTGAGCTTCTTCTCTCTGAAGATGGACTCGGCTATGTTCTTAGCCATTTTCCTCGCTCCTTCAAGTATCATGGCCACGGACATGAGGTGGATGACTTGAAGGACCTAATTGGCTTATACAGGGAATGGCACTCTCGATTACTCCCTTCTCATGCTTTTGATCAATTTGTGTGTAAGGTGGAACAAGTCGCTGCGACAAGACGCATAAAGATGTGTCTTAGGGAATTAAGAGAGAGAGTTGCCAAGGGAGGGGATCCAACAAAATTTCAGGAGCAGCCAACTGTAGATGACAATCCTAGCAATGAACAGGAAGAGATAAACAATGACAGCATGAGTAATAACCCAGGAGAATCTTGTTTGAATAACCATGATGCTGATGATGTACAAGATATGCTTCAGGAAATATATGAGAAAACTACTGAAGTAAGTGTTGCTCTTCTCCTTGTTAATTATACTTTCTACTCCTGTTGTCAATACTCTTTTATCTTTTACATAAAATTTTCGTAA 729 44.31 MEKTTTTTAPTGCYKCGRPGHWSRDCPSSSAPNPNPTSTPLSSARSSSYGSGNGVASDPAKKPKKVPRTRAKLTPELLLSEDGLGYVLSHFPRSFKYHGHGHEVDDLKDLIGLYREWHSRLLPSHAFDQFVCKVEQVAATRRIKMCLRELRERVAKGGDPTKFQEQPTVDDNPSNEQEEINNDSMSNNPGESCLNNHDADDVQDMLQEIYEKTTEVSVALLLVNYTFYSCCQYSFIFYIKFS 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5615987 5618719 - Conep19aG0068100.1 Cone19ag0660 459097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0660 242 ProSiteProfiles Zinc finger CCHC-type profile. 13 28 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone19ag0660 242 MobiDBLite consensus disorder prediction 1 69 - -
Cone19ag0660 242 MobiDBLite consensus disorder prediction 165 194 - -
Cone19ag0660 242 PANTHER TIMELESS INTERACTING-RELATED 7 213 IPR040038 GO:0000076(PANTHER)|GO:0000076(InterPro)|GO:0003677(PANTHER)|GO:0031298(PANTHER)|GO:0043111(PANTHER)|GO:0048478(PANTHER)
Cone19ag0660 242 MobiDBLite consensus disorder prediction 157 197 - -
Cone19ag0660 242 Pfam Replication Fork Protection Component Swi3 72 153 IPR012923 GO:0005634(InterPro)|GO:0006974(InterPro)|GO:0031297(InterPro)
Cone19ag0660 242 MobiDBLite consensus disorder prediction 26 54 - -
Cone19ag0660 242 Gene3D - 8 73 - -
Cone19ag0660 242 SUPERFAMILY Retrovirus zinc finger-like domains 8 30 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone19ag0660 242 Pfam Zinc knuckle 12 28 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone19ag0660 242 SMART c2hcfinal6 12 28 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0660 K10998 - - csv:101222555 259.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0663 Cone-Chr13:6613604 Cone19ag0660 Cone-Chr19:5615987 2.81E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1072 . . . . . . . Bma15g00053 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0663 Cone19ag0660 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011426 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 31