Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0662 ATGGTGGGCCGAAAATTCATGGGGATGGTACCGTCGGAGATTGTGACGTACGCGCTCAACGATGCCTCCGGTTGGTGGCAAGAAATCAACGACTCTCCTGTTTGGCAGAACCGTATCTTTCACATCCTCGCCGCTCTCTATGCCATAGTCGCCGCCGTAGCTTTCGTTCAACTGGTTCGGATACAATTAAGAGTACCAGAGTATGGTTGGACCACGCAGAAGGTCTTCCACTTTCTCAACTTTTTGGTGAACGGGGTCCGGTCGATAGTTTTTGTATTTCGACGAGATGTGCAGAAGTTACATCCTGAGATTCTCCAACATATCTTGCTTGATGTGCCAAGTCTGGCTTTCTTCACAACTTATGCTCTATTGATTCTCTTTTGGGCCGAAATTTACTATCAGGCACGGGCTGTGTCCACTGATGGGCTGAGACCCACTTTCTATACAATAAATGCGGTGGTGTATGCTGTTCAGATTGCCCTATGGCTAATATTGTGGTGGGATCCCGTCCATGTTTTGGTCATCCTGTCAAGGATGTTCTTTGCAGGTGTGTCTTTGTTTGCGGCTCTTGGGTTTCTTCTTTATGGTGGAAGACTCTTCTTCATGTTGCAACGGTTCCCTGTAGAATCCAAAGGAAGACGAAATAAATTGCAAGAGGTTGGCTACGTGACTACGATATGTTTTACATGTTTCCTTGTCAGATGTATCATGATGTGTTTTAATGCCTTCGATAAAGCTGCTGACCTTGAAGTTTTGAACCATCCTGTTCTAAACTTTATCTACTACCTGGCTATTGGGATTGGAAAGCAGCTTGCCAAGAAGCATTTCATCAACCATGTCTTTGGGGTAAATGAATTTGAAGATGGGCACCATTTCTACTGTTTCCTTGAGCACGAGTCTTTCATTCCTAGATGCTTCAATTTCCGAGGCTCGACAAACGACAAGGACCCCATTCCGGCTGCATCGCTTGGCCTTAGACTCACTAAGATCATGTCTGCTATTCTCGAATCCTATGCCTCTGAAGATAGACGACATGTAGATTATCTCGCCATAAGCAACAGTGAAGAATTTCGCAGGTACATAAATTTGATACAAGAACTACACCGGGTGGACCTGCTACAACTATCGGCAGATGAGAAATTAGCGATTTTCTTGGACCTGTACAATGCTATGGTCCAGCCCAACGGTCCGGTTTTTTACGCCTCAAGGGAGGCAGAGCTGAGATGTGCTGCCAGAGAGTTTTTTCAGGGTGGGGGAATGGATGTGAACTTGGATACGAGGGTTGTGGCACTAAGTGGGTTTATTAAGGAGTATAAGGTGGATTTTGAACTAGATAAGGAGATTTTGAAATGA 1353 45.23 MVGRKFMGMVPSEIVTYALNDASGWWQEINDSPVWQNRIFHILAALYAIVAAVAFVQLVRIQLRVPEYGWTTQKVFHFLNFLVNGVRSIVFVFRRDVQKLHPEILQHILLDVPSLAFFTTYALLILFWAEIYYQARAVSTDGLRPTFYTINAVVYAVQIALWLILWWDPVHVLVILSRMFFAGVSLFAALGFLLYGGRLFFMLQRFPVESKGRRNKLQEVGYVTTICFTCFLVRCIMMCFNAFDKAADLEVLNHPVLNFIYYLAIGIGKQLAKKHFINHVFGVNEFEDGHHFYCFLEHESFIPRCFNFRGSTNDKDPIPAASLGLRLTKIMSAILESYASEDRRHVDYLAISNSEEFRRYINLIQELHRVDLLQLSADEKLAIFLDLYNAMVQPNGPVFYASREAELRCAAREFFQGGGMDVNLDTRVVALSGFIKEYKVDFELDKEILK 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5621440 5639248 - Conep19aG0068300.1 Cone19ag0662 459099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0662 450 SUPERFAMILY Winged helix DNA-binding domain 264 313 IPR036390 -
Cone19ag0662 450 Gene3D - 262 345 IPR036388 -
Cone19ag0662 450 PANTHER TOBAMOVIRUS MULTIPLICATION PROTEIN 1-LIKE ISOFORM X1 19 264 IPR040226 -
Cone19ag0662 450 Pfam THH1/TOM1/TOM3 domain 22 265 IPR009457 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0662 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0662 Cone-Chr19:5621440 Cone7ag1572 Cone-Chr7:10770613 2.88E-24 dispersed
Cone13ag0666 Cone-Chr13:6625270 Cone19ag0662 Cone-Chr19:5621440 4.95E-178 transposed
Cone6ag1082 Cone-Chr6:6560897 Cone19ag0662 Cone-Chr19:5621440 8.82E-106 transposed
Cone9ag1071 Cone-Chr9:6021179 Cone19ag0662 Cone-Chr19:5621440 1.32E-104 transposed
Cone13ag0665 Cone-Chr13:6619158 Cone19ag0662 Cone-Chr19:5621440 1.12E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1073 . . . . . . Bma14g01625 . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0665 Cone19ag0662 . . . . . . . . Bda07g01448 . Bpe11g01619 . . . . . Cmo15g00895 . Cma15g00860 . Car15g00811 . . . . . . . . . . . . . . . . . . Chy09g00445 Cme09g01240
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007319 0 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 3 1 1 1 1 0 0 2 1 1 36