Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0668 ATGGGTATAATTCTCATCATTGGTGCTATTTTACACGACCGTAAAACTCTGAAACGTTGGAAATGGAGCTGTGTTCTTATGGATGAGGCTCATGCATTGAAAGACAAAAATAGTTATAGGTGGAAAAACCTAATGTCTGTTGCAAGAAATGCAAACCAACGATTAATGCTGACAGGCACTCCCTTACAAAACGACTTGCATGAGCTTTGGTCATTATTGGAGTTTATGTTGCCTGATGTTTTTGCTAGCGAGGATGTGGATTTGAAAAAGCTATTAAATGCTGAGGATACAGATTTGATTAGTCATATGAAATCCATTTTGGGTCCATTTATTTTGAGGCGACTTAAATCTGATGTAATGCAGCAACTTGTAACAAAGATACAGTGGGAAGCTGCCTATAAAGAAGCCATTGAGGAATATCATGCAGCTTCACGAGCTTGTACTGGTAAAAATTCTGGAAATAACTTCAATGGTACATATGGAAGTCTTCCTAAGCGGCAGATCTCTAACCACTTTTTCCAGTTCCGAAAGATTGCAAACCATCCTCTGCTGGTGCGGCGTATATATCGTGATGAAGATGTTGAACGTTTTGCTTTAAAGTTGCATCCAGTTGGTGCATTTGGTTTTGAATGTAGCTTCGAAAGAGTGGTTGAGGAACTTAAGAGTTATAATACTATGCAATCCTCAGGTTCCCTTCTGCCCCTTTTACATTCTTACAGTATATCTGATGAAAAGGGGATCCTTTCAGATAGACAAGCATTATCTAAACTTCTCCCAACATTAAAAGAAGCTGGACACCGGGCTCTAATCTTCAGCCAATGGACGTCAATGCTAGATATCTTGGAGTGGAGTTTAAACGTCATTGGGTTAGTATATAGACGACTTGATGGAAGTACTCCAGTAGTAGAGAGGCAGACGATAGTTGACACTTTCAATAACAACACATCTATATTTGCATGTTTGTTATCCACGAGAGCTGGGGGCCCAGGGCTTGAACTCGACAGCGACTGA 1011 40.16 MGIILIIGAILHDRKTLKRWKWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPDVFASEDVDLKKLLNAEDTDLISHMKSILGPFILRRLKSDVMQQLVTKIQWEAAYKEAIEEYHAASRACTGKNSGNNFNGTYGSLPKRQISNHFFQFRKIANHPLLVRRIYRDEDVERFALKLHPVGAFGFECSFERVVEELKSYNTMQSSGSLLPLLHSYSISDEKGILSDRQALSKLLPTLKEAGHRALIFSQWTSMLDILEWSLNVIGLVYRRLDGSTPVVERQTIVDTFNNNTSIFACLLSTRAGGPGLELDSD 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5692050 5694248 + Conep19aG0068900.1 Cone19ag0668 459105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0668 336 PANTHER SNF2/RAD54 HELICASE FAMILY 11 334 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0008094(PANTHER)
Cone19ag0668 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 333 IPR027417 -
Cone19ag0668 336 FunFam Transcription regulatory protein SNF2 93 123 - -
Cone19ag0668 336 Pfam SNF2-related domain 10 182 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cone19ag0668 336 Gene3D - 3 138 IPR038718 -
Cone19ag0668 336 CDD SF2_C_SNF 252 333 IPR049730 -
Cone19ag0668 336 Pfam Helicase conserved C-terminal domain 252 333 IPR001650 -
Cone19ag0668 336 Gene3D - 248 335 IPR027417 -
Cone19ag0668 336 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 253 336 IPR001650 -
Cone19ag0668 336 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 79 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0668 K14439 - - gmx:100806323 479.944
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0668 Cone-Chr19:5692050 Cone4ag0168 Cone-Chr4:786699 6.28E-37 dispersed
Cone19ag0668 Cone-Chr19:5692050 Cone13ag0678 Cone-Chr13:6750545 8.69E-196 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1106 . . . . . . . . . . . . Car04g00912 . . . . . . . . . . . . . . . . . . Cone13ag0678 Cone19ag0668 . . . . . . . . . . Bpe11g01720 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010131 0 0 1 0 1 1 2 1 2 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 0 3 2 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45318 PF03145 Sina 5.30E-56 CL0389 Cone TR