Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0669 ATGGCAACAAACAGGTTCATATGTGAAGTATGCAACAAAGGGTTCCAGAGGGAGCAAAACCTACAGCTCCACAGAAGAGGACACAACCTCCCTTGGAAGCTTAAGCAGAAGACAAACAAAGAGCCCAAGCGCAAAGTCTATCTCTGCCCGGAGCCCACTTGCGTCCACCACGACCCCTCTCGGGCTCTCGGCGACCTCACTGGAATAAAAAAGCATTACTCTCGAAAGCACGGCGAGAAAAAATGGAAGTGTGAGAAATGCTCAAAGAGATATGCTGTTCAGTCTGATTGGAAGGCTCATTCTAAAACTTGTGGCACTAGAGAATACAGATGTGATTGTGGGACTCTCTTCTCTAGGCGGGACAGTTTCATCACTCACAGAGCCTTCTGTGATGCATTGGCTCAAGAGAGTGCAAGGCATCCACCAAACCTTATAAGCTCTATGGGAAGCAATATTCTATATGGAACTAGCAATACAAGCTTAGACCTCTCCCAAGTGAACCCTCACCTATCAACAATCCAAAACCACCCTCTACCCAATTCCGGACATCATGATATCTTACGGCTCGGGATAGCTCATCATCCTAAATTCGAGCACCTTATGAATCAACAACCTTCATTAGACGGTGTTAATCCTATGCACAATCCTGCCTCCTTCTTCTTATCAGATGCGTCTGAAGACAGCTTCCAAAACAACAAGCCGCTGAATCCTCTTACGCAACTTCATCATGATCATCATCTTCATAGCAATAATAATGCTAGCAATATAAATTCTCCCAACTCATCTAGTACTCCTAATAATAATCTCTTCAACCATGGAAACAGCTTCTTCTTCAACTACAATGCCAATACTAGTACTACTACAGGAGACTTTGACATGAACGGGAATAATGGTGGGAACCAATTAAACTTCCTTTCTAACATGAATGGTAGTAGCACTCATACTGATCATAACCTAATTTCCACAGCTGGTACTATATCTTCTCTCTACGGACATGATCATCATCATCATCATCGGCCAGTGCAACCGAAGGATATTAACTCGGCCCACATGTCCGCTACGGCATTGCTTCAAAAGGCTGCTCAAATGGGTTCAACTACAAGTACCAATAATAGCAATACTTCGTCGTCTTTGCTAAAAAGCCTTCATGGTAGTTCCGTAAATAATGCGAAATCCGACCGGCAACTTCTGAATGGCGTTTTCGGTAACGACGGTATGGTGCTAGAAAATGAGACCAACCAGCTTCAAGGGTTAATGAAGTCTCTTTCCAATTATAATTCTTCCATATACGGAAGCAGTAGTACTACTAGTAGTACTCATGATCATGATCATCAGAGTGGAGTACGGGATAATTACATGAACCATAAAACTTTTGGCGAGTACAGTAATTTTGGAAACACGCAGGAGGCTCATCATGAGGCTAGTAAGTTGCATCAAAACCTGTCTAGGTCTGACAAGTTAACGTTGGATTTCCTAGGTGTGGGTGGGTTTGTAAGAAACATGCAAGGTGGCGGGTATAATTCACAGACTAGATCACATCAGCAGCAGCAGCAACATCATAGTACTCTTCATGCAGGGCCCTCCTTGGATCCCCCCGGGCTGAAATCAGGGCAGACAGGTCAACATTTTGGAGGCGCACTGCATTGA 1647 44.08 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLISSMGSNILYGTSNTSLDLSQVNPHLSTIQNHPLPNSGHHDILRLGIAHHPKFEHLMNQQPSLDGVNPMHNPASFFLSDASEDSFQNNKPLNPLTQLHHDHHLHSNNNASNINSPNSSSTPNNNLFNHGNSFFFNYNANTSTTTGDFDMNGNNGGNQLNFLSNMNGSSTHTDHNLISTAGTISSLYGHDHHHHHRPVQPKDINSAHMSATALLQKAAQMGSTTSTNNSNTSSSLLKSLHGSSVNNAKSDRQLLNGVFGNDGMVLENETNQLQGLMKSLSNYNSSIYGSSSTTSSTHDHDHQSGVRDNYMNHKTFGEYSNFGNTQEAHHEASKLHQNLSRSDKLTLDFLGVGGFVRNMQGGGYNSQTRSHQQQQQHHSTLHAGPSLDPPGLKSGQTGQHFGGALH 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5696424 5700582 + Conep19aG0069000.1 Cone19ag0669 459106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0669 548 MobiDBLite consensus disorder prediction 502 548 - -
Cone19ag0669 548 Pfam Zinc-finger of C2H2 type 6 28 IPR013087 -
Cone19ag0669 548 Coils Coil 408 428 - -
Cone19ag0669 548 Gene3D Classic Zinc Finger 6 50 - -
Cone19ag0669 548 FunFam Zinc finger protein MAGPIE 2 29 - -
Cone19ag0669 548 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Cone19ag0669 548 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 108 147 - -
Cone19ag0669 548 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Cone19ag0669 548 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Cone19ag0669 548 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 513 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone19ag0669 548 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 81 105 - -
Cone19ag0669 548 SMART c2h2final6 6 28 IPR013087 -
Cone19ag0669 548 SMART c2h2final6 82 102 IPR013087 -
Cone19ag0669 548 SMART c2h2final6 47 77 IPR013087 -
Cone19ag0669 548 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Cone19ag0669 548 Gene3D Classic Zinc Finger 60 139 - -
Cone19ag0669 548 MobiDBLite consensus disorder prediction 502 524 - -
Cone19ag0669 548 MobiDBLite consensus disorder prediction 244 268 - -
Cone19ag0669 548 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 43 77 - -
Cone19ag0669 548 MobiDBLite consensus disorder prediction 359 386 - -
Cone19ag0669 548 MobiDBLite consensus disorder prediction 250 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0669 Cone-Chr19:5696424 Cone3ag1314 Cone-Chr3:32052872 1.21E-88 dispersed
Cone19ag0669 Cone-Chr19:5696424 Cone19ag0670 Cone-Chr19:5703595 1.33E-124 tandem
Cone13ag0679 Cone-Chr13:6757015 Cone19ag0669 Cone-Chr19:5696424 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45319 PF02245 Pur_DNA_glyco 1.40E-09 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0669 K25870 - mdm:114820528 447.973