Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0670 ATGGCGACATCTTCATCAGCAGGGTTTATGGGAATTATAGAAGAAGATGAAGACAAGATGATGATGATGCAATTACAAAAACATTCCTCTGCATCAAATGCTTCTGCCGCCGCTCCAATTACAACTGCTCCTCCGCCGCCTAAGAAGAAGAGAAATCAACCTGGAACTCCAAATCCAGATGCGGAGGTCATAGCGCTATCGCCCAAAACACTGATGGCAACAAACAGGTTCATATGTGAAGTATGCAGCAAAGGGTTCCAGAGGGAGCAAAACCTACAGCTCCACAGAAGAGGACACAACCTCCCTTGGAAGCTTAAGCAGAAGACAAACAAAGAGCCCAAGCGCAAAGTCTATCTCTGCCCGGAGCCCACTTGTGTCCACCACGACCCCTCTCGGGCTCTCGGGGACCTCACCGGAATCAAAAAGCACTACTCTCGAAAGCACGGCGAGAAGAAATGGAAGTGCGAGAAATGTTCAAAGAGATATGCTGTTCAGTCTGATTGGAAGGCTCATTCTAAGACTTGCGGCACTAGAGAATACAGATGTGATTGTGGTACTCTCTTCTCTAGGCGTGACAGCTTCATCACCCATAGGGCCTTCTGTGATGCACTGGCTCAAGAAAGTGCAAGAAACCCTCCAATAGGAAGCCACCTTTTTGGAGGTAGCAATGTTGGTTTGGGCTTATCTCAAGTTGCTCCTCAAATATCCTCCATACAAGATCATCAAAGCACTCAATCCGGTACCGACGTTCTACGACTTGGCAGTACCGGCCAATTCCATCATCACCTTTTCCCTCCATCACTCGGCTCATCTATATTCCGTCCGCCTCAACCACCGCCCAATATGACTTCGTCGAATTTGTTCTTAAGCAAAACAAACCAAACCGATTACGATGATGATGAAACCGGTCAATCCTCCCACCCGGCTGGAAACAGTTTGTTGCCTAACAAGTCATTTCATGGTCTAATGCAACTCTCTCATGATCATCACATCCAAGCTGCCAACACATCTAGTTCTAATCCTCCATCTATGTTCAACCTAAGCTTCATGTCCAATGCAACAACTCATGATCACGACAATAATAGTAACAGCAGTGATCATAACCCGCCGTCTTCCGGTATGTTAGTTTCCAATCAATTCAACAGTGGAGTGAACGGAAATCGTGGTAATAACGACGGATCGAACATTTTCGGAGTCAACAACATGATGGTAGGGGATCAGATTAGCTCAGGCGCAGTTTCATCTCTCTATAGCACGTCTATCCAGAATAGCAATGCTAGCGCTCTCCCTCACATGTCTGCAACTGCACTACTCCAAAAGGCCGCTCAACTAGGGTCAACCACTTCAACGAACAACAATGCGCCATTTCTTCGTAATTTTGAAGGCTCGTCGGCTGCCGGCTCCAAATCTGACATGCTGTACCCTAATCCAGTGGCTAATAACTTCGAGAGCATTTACGGGGAAAATGATCAGAACCATCTTCAAGACCTAATGAATTACTCCTTGATCAACAGCGGAAACTCGAGTAGTAGTCTCTTCGGAAGTGGGTCCGGAGGGATCAATACATTCTTTAGTGGGCATGATGGGAATAGGTCAAGCATTGAACAGAACCTGGATCAGGAGCCAAAGGTGAGCCAAAACCTTCCAACTCGGAGCGGTAATAGTAGTATTGGAGGGTCAGATAGATTGACAAGGGACTTTCTAGGAGTTGGGGAGATAGTAAGAAGAATAAGTGGAGGGTTTTCTCAAAGGGACCAAAGTCAAACCCAACGTCGGCTACAACAACAACGACGACAACAACATGAGATTGATCAAATAGCCGGATCGTTGGATGAAGGTGGCAGTGCAACGGCAGCGCAGTCAAGCCAGTCATTTGGAGGTGGCGGTGGAAATTTCCATTTGGGAAATGTTTAA 1914 46.71 MATSSSAGFMGIIEEDEDKMMMMQLQKHSSASNASAAAPITTAPPPPKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCSKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARNPPIGSHLFGGSNVGLGLSQVAPQISSIQDHQSTQSGTDVLRLGSTGQFHHHLFPPSLGSSIFRPPQPPPNMTSSNLFLSKTNQTDYDDDETGQSSHPAGNSLLPNKSFHGLMQLSHDHHIQAANTSSSNPPSMFNLSFMSNATTHDHDNNSNSSDHNPPSSGMLVSNQFNSGVNGNRGNNDGSNIFGVNNMMVGDQISSGAVSSLYSTSIQNSNASALPHMSATALLQKAAQLGSTTSTNNNAPFLRNFEGSSAAGSKSDMLYPNPVANNFESIYGENDQNHLQDLMNYSLINSGNSSSSLFGSGSGGINTFFSGHDGNRSSIEQNLDQEPKVSQNLPTRSGNSSIGGSDRLTRDFLGVGEIVRRISGGFSQRDQSQTQRRLQQQRRQQHEIDQIAGSLDEGGSATAAQSSQSFGGGGGNFHLGNV 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5703595 5707740 - Conep19aG0069100.1 Cone19ag0670 459107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0670 637 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 586 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone19ag0670 637 Gene3D Classic Zinc Finger 56 125 - -
Cone19ag0670 637 FunFam protein indeterminate-domain 5, chloroplastic-like 131 210 - -
Cone19ag0670 637 MobiDBLite consensus disorder prediction 579 637 - -
Cone19ag0670 637 Pfam Zinc finger, C2H2 type 77 99 IPR013087 -
Cone19ag0670 637 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Cone19ag0670 637 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 152 176 - -
Cone19ag0670 637 MobiDBLite consensus disorder prediction 333 389 - -
Cone19ag0670 637 FunFam protein indeterminate-domain 12-like 56 124 - -
Cone19ag0670 637 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 114 148 - -
Cone19ag0670 637 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 179 212 - -
Cone19ag0670 637 MobiDBLite consensus disorder prediction 614 629 - -
Cone19ag0670 637 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Cone19ag0670 637 MobiDBLite consensus disorder prediction 580 594 - -
Cone19ag0670 637 MobiDBLite consensus disorder prediction 25 39 - -
Cone19ag0670 637 MobiDBLite consensus disorder prediction 540 561 - -
Cone19ag0670 637 MobiDBLite consensus disorder prediction 266 317 - -
Cone19ag0670 637 MobiDBLite consensus disorder prediction 18 62 - -
Cone19ag0670 637 SMART c2h2final6 153 173 IPR013087 -
Cone19ag0670 637 SMART c2h2final6 118 148 IPR013087 -
Cone19ag0670 637 SMART c2h2final6 77 99 IPR013087 -
Cone19ag0670 637 Gene3D Classic Zinc Finger 131 210 - -
Cone19ag0670 637 SUPERFAMILY beta-beta-alpha zinc fingers 76 173 IPR036236 -
Cone19ag0670 637 MobiDBLite consensus disorder prediction 540 563 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0679 Cone-Chr13:6757015 Cone19ag0670 Cone-Chr19:5703595 2.01E-123 dispersed
Cone13ag0680 Cone-Chr13:6762851 Cone19ag0670 Cone-Chr19:5703595 0 dispersed
Cone19ag0670 Cone-Chr19:5703595 Cone3ag0282 Cone-Chr3:1468105 6.98E-98 dispersed
Cone19ag0669 Cone-Chr19:5696424 Cone19ag0670 Cone-Chr19:5703595 1.33E-124 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45320 PF13839 PC-Esterase 8.80E-101 CL0264 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0670 K25870 - vvi:100251079 617.461