Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0688 ATGGCATTTGCAACAGCTCCGAATCATTCTTCTGGCAGTACTAATACAGAATCTTCGAGTGATGAGTTGTACAAGGAATTATGGCATGCCTGTGCAGGACCACTTGTTACCCTTCCTCGTCAAGGGGAGAGGGTATATTACTTTCCGCAGGGTCACATGGAACAGCTGGAAGCATCAATGCATCAAGGGTCAGAGCAAAAGATGCCATCATTTAATCTGCCATCAAAAATACTTTGTAAAGTTGTTAATGTCCAGCTTCGGGCTGAACCTGAAACAGATGAAGTCTATGCACAGATAACTCTCCTTCCTGTAGATCAAGGTGAAGTAACGAGCCCAGATCCACCTCTCCCTGAGCCTCCAAGGTGCAATGTTCATTCATTTTGCAAGACACTTACTGCCTCTGACACTAGCACCCATGGAGGCTTCTCTGTCCTTCGGAGGCATGCGGATGATTGTCTTCCACCTTTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATAAAAATGAGTGGCATTTTCGGCACATTTTTCGAGGCCAACCTAGGCGCCATTTACTAACAACAGGATGGAGTGTCTTTGTTAGTTCCAAAAAATTGGTAGCTGGTGATGCTTTTATATTTCTAAGAGGTGAGAATGGAGAGCTCCGTGTTGGGGTGAGGCGACTCATGCGACAACTGAACAATATGCCATCTTCTGTAATATCAAGTCACAGTATGCATCTTGGAGTTCTGGCTACTGCATCTCATGCCATTTCAACAGGAACATTCTTTTCTGTATTTTACAAGCCAAGAACAAGTAGGTCTGAGTTCATTGTAAGTCTAAACAAATACCTTGAAGCTCGAAATCATAAGCTTTCTGTTGGAATGAGGTTCAAGATGAGATTCGAGGCTGAGGAAGTCCCTGAAAGAAGGTTCAGTGGTACCATTGTTGGTGTTGGAGATAATCCCTCATCTGGATGGGCTGATTCCGAGTGGAGATCATTAAAGGTTCAATGGGATGAACCTTCATCCATTTTACGGCCAGATAGAGTTTCGCCTTGGGAATTGGAGCCACTCGTTGCAACTAATCCTCCAGTCTCCCAACCTACTCAGAGGAGCAAGCGTTCACGGCCAACCATTTTACCTACGCCACCACGAGATATATCTGTTATCAGTGGATGGAAAACCGCAGAATCTCCAGTCTTTTCACACTCTGACTCGCAATATGGAAAAAACTTCTATCCATTATCAGATTATGGTACTGCCACAACAACAAACTCCATTGGATTTAATGGGAATAGCTCTTTTTCAATGGTTTCCAACAATTCTTATTGGTCTAATCGGGTAGAAACTGTAACGGATTCTTTTTCCCCTGTCGCAAAGAAAGAATCTGGTGAAAGGAAACGATGCTCTGGGAGTGGCTGCAGGTTGTTTGGGATCCAGCTGCTTGGAAGCTGTAATGCAGAGGACACTTCGCCAGTTACAGTGTCTAGAAATGTGGGAGATGATCAACTGATTCCATCTTTAGAGACTGGATTAGATCAGCATTCTGAACCATCAAATGTCAACCGATGTGATATTCCCTCAGTAAGCTGTGATGCTGAGAAATCAAGCTTGAGATCTCCTCAGGAGTCTCAAAGTAGGCAAATTCGTAGCTGCACAAAGGTTCACATGGAAGGGATTGCCGTGGGAAGGGCTGTAGATTTGACCAGGTTTGATCGGTACGGAGATTTGCTGAGGAAGCTGGAGGAGATGTTTGACATTGAGGGTGAGCTCCGTGGATCTACAAAGAAATGGCAGGTTGTCTATACTGATGATGAGGATGACATGATGTTGGTTGGGGATGATCCATGGAATGAGTTCTGCAGCATGGTGAGGAAGATATTCATCTACACAACAGAGCAAGCAAAGAGACTTTCACCCAAGATAAAACTCCCAGTAAGAGAAGATGGCATGCTCAATAAACCAGATTCTGAAGCAGCCATCAACACTGAGGACCAGTCATCCATTGTGGGATCGGGATGCTGA 2025 44.64 MAFATAPNHSSGSTNTESSSDELYKELWHACAGPLVTLPRQGERVYYFPQGHMEQLEASMHQGSEQKMPSFNLPSKILCKVVNVQLRAEPETDEVYAQITLLPVDQGEVTSPDPPLPEPPRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHKNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAISTGTFFSVFYKPRTSRSEFIVSLNKYLEARNHKLSVGMRFKMRFEAEEVPERRFSGTIVGVGDNPSSGWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVATNPPVSQPTQRSKRSRPTILPTPPRDISVISGWKTAESPVFSHSDSQYGKNFYPLSDYGTATTTNSIGFNGNSSFSMVSNNSYWSNRVETVTDSFSPVAKKESGERKRCSGSGCRLFGIQLLGSCNAEDTSPVTVSRNVGDDQLIPSLETGLDQHSEPSNVNRCDIPSVSCDAEKSSLRSPQESQSRQIRSCTKVHMEGIAVGRAVDLTRFDRYGDLLRKLEEMFDIEGELRGSTKKWQVVYTDDEDDMMLVGDDPWNEFCSMVRKIFIYTTEQAKRLSPKIKLPVREDGMLNKPDSEAAINTEDQSSIVGSGC 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5790271 5796266 - Conep19aG0070900.1 Cone19ag0688 459125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0688 674 Pfam AUX/IAA family 594 641 IPR033389 -
Cone19ag0688 674 Pfam AUX/IAA family 542 586 IPR033389 -
Cone19ag0688 674 MobiDBLite consensus disorder prediction 359 384 - -
Cone19ag0688 674 Gene3D - 290 362 - -
Cone19ag0688 674 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
Cone19ag0688 674 FunFam Auxin response factor 125 229 - -
Cone19ag0688 674 MobiDBLite consensus disorder prediction 362 377 - -
Cone19ag0688 674 FunFam Auxin response factor 290 362 - -
Cone19ag0688 674 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone19ag0688 674 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677(InterPro)
Cone19ag0688 674 SUPERFAMILY CAD & PB1 domains 552 627 - -
Cone19ag0688 674 SUPERFAMILY DNA-binding pseudobarrel domain 116 256 IPR015300 -
Cone19ag0688 674 CDD B3_DNA 125 227 IPR003340 GO:0003677(InterPro)
Cone19ag0688 674 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
Cone19ag0688 674 ProSiteProfiles PB1 domain profile. 550 634 IPR053793 -
Cone19ag0688 674 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 640 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone19ag0688 674 Gene3D - 545 639 - -
Cone19ag0688 674 Gene3D - 124 229 IPR015300 -
Cone19ag0688 674 FunFam Auxin response factor 545 639 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0257 Cone-Chr13:1771296 Cone19ag0688 Cone-Chr19:5790271 1.58E-203 dispersed
Cone14ag0428 Cone-Chr14:2007796 Cone19ag0688 Cone-Chr19:5790271 1.78E-198 dispersed
Cone15ag0465 Cone-Chr15:2208844 Cone19ag0688 Cone-Chr19:5790271 1.57E-193 dispersed
Cone19ag0242 Cone-Chr19:1587389 Cone19ag0688 Cone-Chr19:5790271 3.43E-200 dispersed
Cone19ag0688 Cone-Chr19:5790271 Cone9ag0869 Cone-Chr9:4229505 5.59E-196 dispersed
Cone11ag0871 Cone-Chr11:7212441 Cone19ag0688 Cone-Chr19:5790271 9.57E-138 transposed
Cone13ag0695 Cone-Chr13:6850298 Cone19ag0688 Cone-Chr19:5790271 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45321 PF00487 FA_desaturase 4.50E-30 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0688 K14486 - mdm:103441991 1061.21