Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0696 ATGGAAGCGATGCCGCACCCAACACCTCGAACCGTAGAGGAGGTTTTAAGCGACTTCAAAGGTCGCCGTGCCGGTTTAATCAAGGCCCTTACCGCAGATGTTGAAAAGTTTTACCAGCAATGCGATCCTGATAATGAGAATTTGTGTCTTTATGGACTTCCAAATGAGACATGGGAAGTTAACCTGCCTGTTGAGGAAGTGCCGCCTGAGCTGCCCGAGCCAGCATTAGGCATAAACTTTGCTAGGGATGGGATGCAGGAGAAGGATTGGTTATCTTTGGTTGCAGTTCACAGTGATTCATGGTTGCTTGCTGTTGCCTTCTATTTTGGGGCCCGGTTTGGGTTCGGTAAGAATGAAAGGAAGAGGCTTTTCCAGATGATAAATGATTTCCCAACTATATTCGAAGTTGTGGCTGGAACTGGTAAACCACCAAAAGAGCTGTCTGCTTCTCATAACAACAGCAGCAAAAGCAAACCGAATGGAAAACTGTCACGACAATCTGAGGCCCACACTAAGGAAGTGAAGATGTCCCCACCAAACAAAGAAGAGGATGATAGTGGAGAAGAAGAGGAAGATGATGATCAAGGTGCAACATGTGGAGCCTGTGGTGATAACTATGGAACGGATGAGTTCTGGATTTGTTGTGATATTTGTGAAAGATGGTTCCATGGTAAGTGTGTGAAGATCACGCCTGCAAAAGCCGAGCATATCAAGCAGTACAAGTGTCCAAGTTGCAGTAACAAGAGGGCTAAAGCATAA 759 45.85 MEAMPHPTPRTVEEVLSDFKGRRAGLIKALTADVEKFYQQCDPDNENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDFPTIFEVVAGTGKPPKELSASHNNSSKSKPNGKLSRQSEAHTKEVKMSPPNKEEDDSGEEEEDDDQGATCGACGDNYGTDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRAKA 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5833670 5836299 - Conep19aG0071700.1 Cone19ag0696 459133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0696 252 FunFam PHD finger alfin-like protein 191 247 - -
Cone19ag0696 252 PANTHER CPG BINDING PROTEIN 8 251 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cone19ag0696 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Cone19ag0696 252 SMART PHD_3 198 246 IPR001965 -
Cone19ag0696 252 Pfam PHD-finger 199 245 IPR019787 -
Cone19ag0696 252 CDD PHD_AL_plant 199 248 IPR044104 -
Cone19ag0696 252 MobiDBLite consensus disorder prediction 144 196 - -
Cone19ag0696 252 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cone19ag0696 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 247 IPR013083 -
Cone19ag0696 252 MobiDBLite consensus disorder prediction 146 162 - -
Cone19ag0696 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Cone19ag0696 252 MobiDBLite consensus disorder prediction 163 182 - -
Cone19ag0696 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0696 Cone-Chr19:5833670 Cone3ag0883 Cone-Chr3:4532881 6.04E-152 dispersed
Cone9ag1035 Cone-Chr9:5544361 Cone19ag0696 Cone-Chr19:5833670 3.98E-70 transposed
Cone13ag0701 Cone-Chr13:6892579 Cone19ag0696 Cone-Chr19:5833670 2.58E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45322 PF03735 ENT 8.60E-28 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0696 K26274 - csv:101212601 443.736