Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0716 ATGTTGAATTTGGAGGGTAATAGTGGCAGCAAGAAGAGGAAGAGAGGGGAGAGGGTGTTTAGGTTTAAGAGCTTCGGCGAAAATGGCCACCCGGTTGAGTTTGTGGGTCCCTTTCGAGAGAATGTGAGGACTCTTCTGGAATATGGGCATCTGGAGAGCAATTTATGTGGAGGTTTGCAAAGTTGGTCTTTTCAGCTTGAAGTTCATCGCCACCCTCCTTTCCATATCCTCTTGTTCGTCGTTGAAGAACCCGTCAATGAGGCATCGCCAAATCGCCATTGCAAGCAATGCCAATACGTAGGCTGGGGACACCACATGATTTGCAATAAGAAGTATCACTTTGTGTTGCCCTCTAAAGAAACCATATTAACGGCTTGTTTCGATTGCAAACCGGCCAGTAATAGTGAGGATTCTGTAAATTATGATCGACACAAATCCAGCTTAGTAGAATTACAAGGTCATATAATGCATGGTGTCTTTCATTCTAATGGGTTTGGGCACCTGTTATGTGTCAATGGACTCGAAACTGGTTCCGATTTGGCTGGTCACCAAATCATGGCATTTTGGGACCGTTTGTGCACCGGATTGCGAGCGAGGAAAGTGAGTCTAAATGACATTTCACAAAAGAAAGGCATGGAACTAAGGCTAATCCATGGAGTAGCATATGGTGAGCCATGGTTTGGTCGGTGGGGTTACAAATTCGGACGTGGAACCTTCTGTGTCACCGAACAAATGTACCACAAAGCAATAGAGGCTATACAGGCCATGCCATTATGTTTGCTTCTTCATCTTCTAGGCTCCTCTAACCATGACATAGTTTTAATCTTCTCAAGATATCAAACATTATCCGACAACTCATTGGTGAGCCTCAGTGATCTATTCCATTTCATGCTAGAACTCAAGTCCCGGCTTCCAAGAGAAAAATCATGTATAGATTCTTACAATGCCACAATGTTGGTTGAAACTACATGTAGATGGTCCCCCAAGAGAGTCGATATGGCGATTCGGGTTGTTGTTGAAGCTCTAAAAAGAGCTGAATTTAGATGGGTTTCAAGGCAACAAGTTAGGGATGCAGCTAGGGTTTACATTGGTGACACGGGTTTATTAGATTTTGTTCTCAAATCATTAGGAAATCATATAGTGGGAAATTATCTTGTTCGTCGAACCTTGAATCCGGTGACAAAAGTTCTCGAATATTGTTTGCAAGACATTTCAAATGTGTTCCCTAACCAAGAAGGTAACATGGTCCTTAACAATTCCAAAATTAAGGCACGTTACAGTGTCACCAGGCTTCAATTGATGAAGGACATGTTCTATCTGTACAAGTACATTTTCAAGGAACAAAAGCCATTGGTGACAGTAGAGATGAATGTTTCAGCCATTACAATGGTGGCAAGGACAATTCTTGACTCAAAATACCTGGTCAAACAGTACAACGGAGAGCCGCCTCTAAAAGCCGAACTAGGGTTTGAAGGAAAACCAAATCTCTATTGCACCGTTACTTTCAACAACATAATGCCTCCGCCATACGAGTGTTTTGCATTGAAAAACACCACCACCATTGATGAACTTAAGCGAAAAGTCGAGATAAATTTCAAAGATATCTATTGGGGATTGAGAAACTTTGTCGCGGAATCGGCTATGAATTTGAATGCTAAGACATCCGATTCAGTGTTCGGTCTGATTGAAGCGGGCGGTAAGGTTGTGTTCGAGGGATTTGATAGAGAGAGAAGAGCTATAAGCATGGATATGTATGAGAGTGGTGAGAATGAGAATGTTGTGGATTGTTCATGTGGAGCCAAAGACGACGATGGAGAAAGAATGGTCTCTTGTGATATTTGTGAAGTTTGGCAGCATACTAGATGTGTTCATATACCTAATGATGAAGAAATTCCTCAAATTTTTCTTTGCAATCGTTGTGAACAGGAAATTATCCAGTTCCCTTCTTTACCATAA 1956 41.92 MLNLEGNSGSKKRKRGERVFRFKSFGENGHPVEFVGPFRENVRTLLEYGHLESNLCGGLQSWSFQLEVHRHPPFHILLFVVEEPVNEASPNRHCKQCQYVGWGHHMICNKKYHFVLPSKETILTACFDCKPASNSEDSVNYDRHKSSLVELQGHIMHGVFHSNGFGHLLCVNGLETGSDLAGHQIMAFWDRLCTGLRARKVSLNDISQKKGMELRLIHGVAYGEPWFGRWGYKFGRGTFCVTEQMYHKAIEAIQAMPLCLLLHLLGSSNHDIVLIFSRYQTLSDNSLVSLSDLFHFMLELKSRLPREKSCIDSYNATMLVETTCRWSPKRVDMAIRVVVEALKRAEFRWVSRQQVRDAARVYIGDTGLLDFVLKSLGNHIVGNYLVRRTLNPVTKVLEYCLQDISNVFPNQEGNMVLNNSKIKARYSVTRLQLMKDMFYLYKYIFKEQKPLVTVEMNVSAITMVARTILDSKYLVKQYNGEPPLKAELGFEGKPNLYCTVTFNNIMPPPYECFALKNTTTIDELKRKVEINFKDIYWGLRNFVAESAMNLNAKTSDSVFGLIEAGGKVVFEGFDRERRAISMDMYESGENENVVDCSCGAKDDDGERMVSCDICEVWQHTRCVHIPNDEEIPQIFLCNRCEQEIIQFPSLP 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5921912 5924200 - Conep19aG0073700.1 Cone19ag0716 459153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0716 651 SUPERFAMILY FYVE/PHD zinc finger 585 643 IPR011011 -
Cone19ag0716 651 CDD PHD_MMD1_like 595 640 - -
Cone19ag0716 651 SMART PHD_3 595 641 IPR001965 -
Cone19ag0716 651 ProSitePatterns Zinc finger PHD-type signature. 596 640 IPR019786 -
Cone19ag0716 651 Pfam PHD-finger 596 640 IPR019787 -
Cone19ag0716 651 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 11 647 - -
Cone19ag0716 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 580 645 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0716 K26271 - - vvi:100244077 885.945
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0716 Cone-Chr19:5921912 Cone7ag0799 Cone-Chr7:5733053 4.98E-123 dispersed
Cone19ag0716 Cone-Chr19:5921912 Cone9ag1181 Cone-Chr9:8424735 2.35E-90 transposed
Cone19ag0716 Cone-Chr19:5921912 Cone6ag1206 Cone-Chr6:9381062 1.20E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g555 . . . . . . . . . . . . . . Sed04g3065 . . Bhi07g00146 Tan04g1690 Cmetu08g1955 Lac13g1666 . . . . . . . . . . . Cone19ag0716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag1235 . 158 939 PHD Transcription Factor Family AT2G36720 50.8 5.0e-224 775.4
Cone19ag1312 . 5 872 PHD Transcription Factor Family AT3G53680 56.5 2.2e-265 912.5
Cone13ag1327 . 1 864 PHD Transcription Factor Family AT3G53680 55.0 3.3e-261 898.7
Cone3ag0322 . 378 507 PHD Transcription Factor Family AT3G53680 56.2 2.6e-40 164.9
Cone5ag0283 . 418 547 PHD Transcription Factor Family AT3G53680 52.3 2.3e-36 151.8
Cone19ag0716 . 11 651 PHD Transcription Factor Family AT5G22260 51.6 1.1e-185 647.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009705 1 1 1 0 1 2 1 2 1 1 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45323 PF00071 Ras 1.50E-61 CL0023 Cone TR