Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0716 ATGTTGAATTTGGAGGGTAATAGTGGCAGCAAGAAGAGGAAGAGAGGGGAGAGGGTGTTTAGGTTTAAGAGCTTCGGCGAAAATGGCCACCCGGTTGAGTTTGTGGGTCCCTTTCGAGAGAATGTGAGGACTCTTCTGGAATATGGGCATCTGGAGAGCAATTTATGTGGAGGTTTGCAAAGTTGGTCTTTTCAGCTTGAAGTTCATCGCCACCCTCCTTTCCATATCCTCTTGTTCGTCGTTGAAGAACCCGTCAATGAGGCATCGCCAAATCGCCATTGCAAGCAATGCCAATACGTAGGCTGGGGACACCACATGATTTGCAATAAGAAGTATCACTTTGTGTTGCCCTCTAAAGAAACCATATTAACGGCTTGTTTCGATTGCAAACCGGCCAGTAATAGTGAGGATTCTGTAAATTATGATCGACACAAATCCAGCTTAGTAGAATTACAAGGTCATATAATGCATGGTGTCTTTCATTCTAATGGGTTTGGGCACCTGTTATGTGTCAATGGACTCGAAACTGGTTCCGATTTGGCTGGTCACCAAATCATGGCATTTTGGGACCGTTTGTGCACCGGATTGCGAGCGAGGAAAGTGAGTCTAAATGACATTTCACAAAAGAAAGGCATGGAACTAAGGCTAATCCATGGAGTAGCATATGGTGAGCCATGGTTTGGTCGGTGGGGTTACAAATTCGGACGTGGAACCTTCTGTGTCACCGAACAAATGTACCACAAAGCAATAGAGGCTATACAGGCCATGCCATTATGTTTGCTTCTTCATCTTCTAGGCTCCTCTAACCATGACATAGTTTTAATCTTCTCAAGATATCAAACATTATCCGACAACTCATTGGTGAGCCTCAGTGATCTATTCCATTTCATGCTAGAACTCAAGTCCCGGCTTCCAAGAGAAAAATCATGTATAGATTCTTACAATGCCACAATGTTGGTTGAAACTACATGTAGATGGTCCCCCAAGAGAGTCGATATGGCGATTCGGGTTGTTGTTGAAGCTCTAAAAAGAGCTGAATTTAGATGGGTTTCAAGGCAACAAGTTAGGGATGCAGCTAGGGTTTACATTGGTGACACGGGTTTATTAGATTTTGTTCTCAAATCATTAGGAAATCATATAGTGGGAAATTATCTTGTTCGTCGAACCTTGAATCCGGTGACAAAAGTTCTCGAATATTGTTTGCAAGACATTTCAAATGTGTTCCCTAACCAAGAAGGTAACATGGTCCTTAACAATTCCAAAATTAAGGCACGTTACAGTGTCACCAGGCTTCAATTGATGAAGGACATGTTCTATCTGTACAAGTACATTTTCAAGGAACAAAAGCCATTGGTGACAGTAGAGATGAATGTTTCAGCCATTACAATGGTGGCAAGGACAATTCTTGACTCAAAATACCTGGTCAAACAGTACAACGGAGAGCCGCCTCTAAAAGCCGAACTAGGGTTTGAAGGAAAACCAAATCTCTATTGCACCGTTACTTTCAACAACATAATGCCTCCGCCATACGAGTGTTTTGCATTGAAAAACACCACCACCATTGATGAACTTAAGCGAAAAGTCGAGATAAATTTCAAAGATATCTATTGGGGATTGAGAAACTTTGTCGCGGAATCGGCTATGAATTTGAATGCTAAGACATCCGATTCAGTGTTCGGTCTGATTGAAGCGGGCGGTAAGGTTGTGTTCGAGGGATTTGATAGAGAGAGAAGAGCTATAAGCATGGATATGTATGAGAGTGGTGAGAATGAGAATGTTGTGGATTGTTCATGTGGAGCCAAAGACGACGATGGAGAAAGAATGGTCTCTTGTGATATTTGTGAAGTTTGGCAGCATACTAGATGTGTTCATATACCTAATGATGAAGAAATTCCTCAAATTTTTCTTTGCAATCGTTGTGAACAGGAAATTATCCAGTTCCCTTCTTTACCATAA 1956 41.92 MLNLEGNSGSKKRKRGERVFRFKSFGENGHPVEFVGPFRENVRTLLEYGHLESNLCGGLQSWSFQLEVHRHPPFHILLFVVEEPVNEASPNRHCKQCQYVGWGHHMICNKKYHFVLPSKETILTACFDCKPASNSEDSVNYDRHKSSLVELQGHIMHGVFHSNGFGHLLCVNGLETGSDLAGHQIMAFWDRLCTGLRARKVSLNDISQKKGMELRLIHGVAYGEPWFGRWGYKFGRGTFCVTEQMYHKAIEAIQAMPLCLLLHLLGSSNHDIVLIFSRYQTLSDNSLVSLSDLFHFMLELKSRLPREKSCIDSYNATMLVETTCRWSPKRVDMAIRVVVEALKRAEFRWVSRQQVRDAARVYIGDTGLLDFVLKSLGNHIVGNYLVRRTLNPVTKVLEYCLQDISNVFPNQEGNMVLNNSKIKARYSVTRLQLMKDMFYLYKYIFKEQKPLVTVEMNVSAITMVARTILDSKYLVKQYNGEPPLKAELGFEGKPNLYCTVTFNNIMPPPYECFALKNTTTIDELKRKVEINFKDIYWGLRNFVAESAMNLNAKTSDSVFGLIEAGGKVVFEGFDRERRAISMDMYESGENENVVDCSCGAKDDDGERMVSCDICEVWQHTRCVHIPNDEEIPQIFLCNRCEQEIIQFPSLP 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5921912 5924200 - Conep19aG0073700.1 Cone19ag0716 459153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0716 651 SUPERFAMILY FYVE/PHD zinc finger 585 643 IPR011011 -
Cone19ag0716 651 CDD PHD_MMD1_like 595 640 - -
Cone19ag0716 651 SMART PHD_3 595 641 IPR001965 -
Cone19ag0716 651 ProSitePatterns Zinc finger PHD-type signature. 596 640 IPR019786 -
Cone19ag0716 651 Pfam PHD-finger 596 640 IPR019787 -
Cone19ag0716 651 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 11 647 - -
Cone19ag0716 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 580 645 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0716 Cone-Chr19:5921912 Cone7ag0799 Cone-Chr7:5733053 4.98E-123 dispersed
Cone19ag0716 Cone-Chr19:5921912 Cone9ag1181 Cone-Chr9:8424735 2.35E-90 transposed
Cone19ag0716 Cone-Chr19:5921912 Cone6ag1206 Cone-Chr6:9381062 1.20E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45323 PF00071 Ras 1.50E-61 CL0023 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0716 K26271 - vvi:100244077 885.945