Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0724 ATGATTTCTACGTGGAGAAGAAGAAGAGCAAGCCGGAGAGCGGCGAAAGAGCGGGGATCAGAAGCCGAGGAGAATGTTGACTTGGAGATCAAGATACCGAACCATTTTCGGTGCCCCATTTCACTCGATTTAATGAAGGATCCGGTTACTTTAGCGACTGGGATCACATATGATCGTGAAAGCATAGAGACTTGGATTAAAGCTGGGAATTTCACTTGTCCGATAACTAATCAAGTCTTGAGGAGTCTAGAGCCTATTCCGAATCACTCGATAAGAAGGATGATACAAGATTGGTGTGTCGTTAACCATTCATATGGAATTGAGAGGATTCCAACACCAAGAATTCCGATAAGCTCAATTGAGGTTTCAGAAATTCTTTCAAGTGTTGTGGAAGCAGGTAACAGAGACGACCATGTCGGGTGCAGAGACTTGGTAGCAAGAATTAAGGCATTGTTGAAGGAGAGTGAACGGAATAAACGGTGCATCGTGGGGAATGAAACGGGGAGTGTGATATCCGCCGCTTTCGAAATGTTTTTGAAAGCCGGTTTTGAGAAAAATGCGGTAGTATTGGAGGAGATCTTGTCAACTTTGACATTGATTTTTCCACTTGATGAGGATGCAAGAGCTTACCTACAATCACCTCCTTCATTGCATTGCTTGGTTTGGTTTCTAAAAATTGGTGACTTATCAACTCGGACAAACTCGGTTTTGGTATTGAAAGAAATTATCTCTTCAAACCCGCATAGCATACCAACTTTAGGAGACATTGATGGGTCTTTGGAAGCTTTAGTGAAGCTAATCAAAGAGCCAATCACACCTACAGCTAGTAAAGCAGCATTAACGATCATTTATCACATGGTTTTACCTCCTTTCACAAATGAGCGTATAATTGGAAGGTATCTAGAGCTAAATTTGGTATTCTTGCTTCTAGAGATGCTTGTTAATTGTGAAAGAAGCATATGTGAAAGGGCATTGGGTGCCCTTGATGGAATTTGCAACAGCAAAGAAGGGCGAGAGAAGGCTTATGATCACGCACTAACAATGCCAATTTTGGTTAAGAAGATCTTGAGGGTTTCGGATATGGCTACTGAGTTTTCAGTTTCAATTCTATGCAAGCTTAGTAAGAATGAAAGGGGAGAAGTTATTGTTGAGGCTTTACAATTGGGTGCATTCCAAAAGCTTTTGTTGTTATTACAAGTTGGCTGTGGTGAGAGCACAAAGACGAAGGCTACTGACTTGTTGAAGTTGTTGAATCTTAAAAGGGAGAAATTGGAGTGTATTGATTCTTTGGATTTTAAGGACCTTAAGAGGTCCTTTTGA 1320 41.14 MISTWRRRRASRRAAKERGSEAEENVDLEIKIPNHFRCPISLDLMKDPVTLATGITYDRESIETWIKAGNFTCPITNQVLRSLEPIPNHSIRRMIQDWCVVNHSYGIERIPTPRIPISSIEVSEILSSVVEAGNRDDHVGCRDLVARIKALLKESERNKRCIVGNETGSVISAAFEMFLKAGFEKNAVVLEEILSTLTLIFPLDEDARAYLQSPPSLHCLVWFLKIGDLSTRTNSVLVLKEIISSNPHSIPTLGDIDGSLEALVKLIKEPITPTASKAALTIIYHMVLPPFTNERIIGRYLELNLVFLLLEMLVNCERSICERALGALDGICNSKEGREKAYDHALTMPILVKKILRVSDMATEFSVSILCKLSKNERGEVIVEALQLGAFQKLLLLLQVGCGESTKTKATDLLKLLNLKREKLECIDSLDFKDLKRSF 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5987822 5989365 + Conep19aG0074500.1 Cone19ag0724 459161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0724 439 SMART Ubox_2 35 98 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone19ag0724 439 SUPERFAMILY ARM repeat 151 408 IPR016024 -
Cone19ag0724 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 108 IPR013083 -
Cone19ag0724 439 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone19ag0724 439 Pfam U-box domain 32 100 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone19ag0724 439 MobiDBLite consensus disorder prediction 1 20 - -
Cone19ag0724 439 Gene3D - 123 426 IPR011989 -
Cone19ag0724 439 CDD RING-Ubox_PUB 33 84 IPR045210 -
Cone19ag0724 439 PANTHER WDSAM1 PROTEIN 28 428 IPR045185 GO:0061630(InterPro)
Cone19ag0724 439 FunFam RING-type E3 ubiquitin transferase 32 104 - -
Cone19ag0724 439 SUPERFAMILY RING/U-box 27 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0724 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0256 Cone-Chr11:1235455 Cone19ag0724 Cone-Chr19:5987822 8.64E-145 dispersed
Cone12ag0032 Cone-Chr12:228996 Cone19ag0724 Cone-Chr19:5987822 3.19E-42 dispersed
Cone18ag1229 Cone-Chr18:8735650 Cone19ag0724 Cone-Chr19:5987822 2.16E-70 dispersed
Cone19ag0724 Cone-Chr19:5987822 Cone3ag0136 Cone-Chr3:756341 4.98E-66 dispersed
Cone13ag0725 Cone-Chr13:6997965 Cone19ag0724 Cone-Chr19:5987822 1.50E-280 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g531 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0725 Cone19ag0724 . . . . Chy10g00211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01122 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010787 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 32