Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0729 ATGTCTTCACACCTAAAACTCCTCCTACTCCTCCTTCTCTTCTTCTTCAACCTCATCACATCTTCTTCCTCACTCACCATAACCTCCTTCTCCATCTCAAACTCGCCATGGCGTCCTACCCAAAATCTCACCATCCTATCGCCCAACTCCACCTTCGCCGCCGGATTCCGCCCCGCCGGCACCAACCCTAACCTCTACATCTTCTCCGTCTGGTTCCACAACATCTCCACCTTAACCCCCGTCTGGTCAGCCAACCTCAATTCGCCGGTCAACTCCTCCGCCGCCCTCCTCATCACCTCCTCCGGCCACCTCATCCTCAACAACACCTCCGGCCAAAACCTATGGCCGGAGACCAACATCTCCAGCACCTCAAACACCTCAAAACTCACCCTCTTCGACAACGGAAATCTCGTCTATGCAAATTGGGAAAGCTTTCAATCTCCCTCTAACACGATCTTACCCAATCAGACCATAAATTCAGCTAAGCTCGTCTCAAACAACGGTAATTTCACGTTTGTAAATTCAACGGAATTATATTTCAACTCCACGTTTGCTTACTGGGATACTTACACTAGACAACTCCAAACGCTAAACGGCGACGGCAGATTGAGCCTAGCAAACGGAGAAATCATCTTCTCTTCGGACTATGGCCCGACCCGTTTGAGACGATTGGTTCTAGAGGACGATGGTAATATCAGAATTTACAGCTTTGACCCTACTCTTCAGCGATGGGTGACTGTCTGGCAAGCTGTTTTACAGTTGTGTTTGATCAAGGGCACTTGTGGGCCCAATGCAATTTGCGTAGACAATGATTTCAGCTCGACCAATTGCGTGTGTCCACCTGGATTTAAGCCTAGATCAGGCGGCTCGAAGCAGGGATGCGATAGGAAAGTCCCGTTGGCAACTGATCGGATGACCAAGTTTGTGCCGCTTGATTATGTGAATTTTACAGGCGGGTCCAATCAGACAGTCCAGAACGTTTTGAATTTTACAGCCTGTCAAGCACTCTGTTTGGCTAAACCAAATTGTCTTGGGTTCTTGTTCAAATTTACCGGAAGCAAGTATTGTGTCCTTCAGCTCGACCGGATGTTGTTCGGTTATTGGCAGCCCGGTTCGGACATGACCATGTTTGTACGCGTGGATCAATCAGAACTCGACACATGGAATTTCACGGGCATGACAAACTTGCTCGAGACGACGTGTCCAGTTCGAATACGCCTGCCTACCCCACCCGACGATTCCAATAGCAACACTAGAAACATAGTGATAATTTGTACCATCTTTGGGGCCGAATTGATTTCGGGCGTTATTTTCTTTTGGGCCTTTTTGAAAAAATTTGTTAAGTACCGTGACATGGCCCAGAAGCTCAGGGTCGAGTCCATGCCAGTTGGCGGGCCAAAACGGTTCACCTATGCAGAGCTTAAGGTCGCCACCAATGATTTCTCCGATCAAATCGGAAGAGGTGGGTTCGGAGACGTCTACAAAGGAGAATTGCCCGATAAACGGGTAGTTGCTGTCAAGTGCTTGAAATATGTTACGGGTGGAGATGCGGAGTTCTGGCCTGAGGTCACGATTATTTCACGAATGCACCACCTAAATTTGGTTAGACTATGGGGCTTTTGTGCCGAAAAAGATCAAAGAATGCTAGTCTATGAGTATGTTACAAACGGGTCCTTAGACAAGTTCCTATTCACTACGGGGCGAGTTGAGTCAATAAATAGTGGGATGGATGTAGATTCGGGTGGGTCGAGTTTGATACTTGATTGGGGGGTGCGGTATCGGATTGCGTTAGGGGTTGCAAGGGCAATTGCATACTTGCACGAGGAATGCTTGGAATGGGTCTTACATTGTGACATTAAGCCGGAGAATATACTTATAGGCGACGATTTTTGCCCGAAATTGTCGGATTTTGGATTAGCAAAGTTGAGGAAAAAAGAGGATATAATAAGTATGTCTCGGATGCGCGGGACTCGAGGATACATGGCGCCCGAATGGATCAAGGCAGACTCGATCACTCCGAAAGCTGACGTGTTCAGTTTTGGGATGGTACTATTGGAGATTGTGGCTGGGGTCAGAAACTTTGAGATGCAAGGATCAATGGCTGAGAGTGCGGATTGGTATTTCCCAAGATGGGCGTTTGATAAGGTGTTCAAGGAGATGAATGTGGATGATATTTTGGACCGTCGGATCAAACAATCTTATGATAATCGTAAACATTTTGATATGGTGAATCGCATGGTTCAGACGGCCATGTGGTGCCTTCAAGATAAACCGGAGATGAGACCATCGATGGGTAAAGTTGCTAAGATGTTGGAAGGGACGGTCGAGATCATTCAGCCGCAAAAGCCCACTATTTTCTTCTTAGCAGACGATTAG 2376 47.47 MSSHLKLLLLLLLFFFNLITSSSSLTITSFSISNSPWRPTQNLTILSPNSTFAAGFRPAGTNPNLYIFSVWFHNISTLTPVWSANLNSPVNSSAALLITSSGHLILNNTSGQNLWPETNISSTSNTSKLTLFDNGNLVYANWESFQSPSNTILPNQTINSAKLVSNNGNFTFVNSTELYFNSTFAYWDTYTRQLQTLNGDGRLSLANGEIIFSSDYGPTRLRRLVLEDDGNIRIYSFDPTLQRWVTVWQAVLQLCLIKGTCGPNAICVDNDFSSTNCVCPPGFKPRSGGSKQGCDRKVPLATDRMTKFVPLDYVNFTGGSNQTVQNVLNFTACQALCLAKPNCLGFLFKFTGSKYCVLQLDRMLFGYWQPGSDMTMFVRVDQSELDTWNFTGMTNLLETTCPVRIRLPTPPDDSNSNTRNIVIICTIFGAELISGVIFFWAFLKKFVKYRDMAQKLRVESMPVGGPKRFTYAELKVATNDFSDQIGRGGFGDVYKGELPDKRVVAVKCLKYVTGGDAEFWPEVTIISRMHHLNLVRLWGFCAEKDQRMLVYEYVTNGSLDKFLFTTGRVESINSGMDVDSGGSSLILDWGVRYRIALGVARAIAYLHEECLEWVLHCDIKPENILIGDDFCPKLSDFGLAKLRKKEDIISMSRMRGTRGYMAPEWIKADSITPKADVFSFGMVLLEIVAGVRNFEMQGSMAESADWYFPRWAFDKVFKEMNVDDILDRRIKQSYDNRKHFDMVNRMVQTAMWCLQDKPEMRPSMGKVAKMLEGTVEIIQPQKPTIFFLADD 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6008821 6011278 - Conep19aG0075000.1 Cone19ag0729 459166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0729 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0729 791 ProSiteProfiles EGF-like domain profile. 251 289 IPR000742 -
Cone19ag0729 791 CDD EGF_CA 255 287 - -
Cone19ag0729 791 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 191 IPR036426 -
Cone19ag0729 791 FunFam Serine/threonine-protein kinase 554 782 - -
Cone19ag0729 791 Gene3D - 34 146 IPR036426 -
Cone19ag0729 791 PANTHER OS07G0415500 PROTEIN 21 787 - -
Cone19ag0729 791 SMART blect_4 40 148 IPR001480 -
Cone19ag0729 791 SUPERFAMILY Hairpin loop containing domain-like 312 360 - -
Cone19ag0729 791 CDD STKc_IRAK 485 773 - -
Cone19ag0729 791 ProSiteProfiles Protein kinase domain profile. 479 787 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0729 791 ProSiteProfiles Bulb-type lectin domain profile. 28 152 IPR001480 -
Cone19ag0729 791 CDD B_lectin 44 148 IPR001480 -
Cone19ag0729 791 Pfam Protein kinase domain 482 768 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0729 791 SUPERFAMILY Protein kinase-like (PK-like) 458 772 IPR011009 -
Cone19ag0729 791 SMART serkin_6 479 771 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0729 791 Gene3D Transferase(Phosphotransferase) domain 1 554 782 - -
Cone19ag0729 791 ProSitePatterns Protein kinases ATP-binding region signature. 485 507 IPR017441 GO:0005524(InterPro)
Cone19ag0729 791 Pfam S-locus glycoprotein domain 206 286 IPR000858 GO:0048544(InterPro)
Cone19ag0729 791 Pfam D-mannose binding lectin 79 162 IPR001480 -
Cone19ag0729 791 Gene3D Phosphorylase Kinase; domain 1 444 553 - -
Cone19ag0729 791 Gene3D - 147 250 IPR036426 -
Cone19ag0729 791 FunFam S-receptor-like serine/threonine-protein kinase 448 553 - -
Cone19ag0729 791 PIRSF SRK 1 209 IPR024171 GO:0004674(InterPro)
Cone19ag0729 791 PIRSF SRK 201 791 IPR024171 GO:0004674(InterPro)
Cone19ag0729 791 ProSiteProfiles PAN/Apple domain profile. 294 381 IPR003609 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0729 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1359 Cone-Chr13:9962191 Cone19ag0729 Cone-Chr19:6008821 1.08E-77 dispersed
Cone19ag0729 Cone-Chr19:6008821 Cone4ag1231 Cone-Chr4:10246847 2.22E-125 dispersed
Cone19ag0729 Cone-Chr19:6008821 Cone19ag1355 Cone-Chr19:8998153 8.52E-128 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0729 . . . Csa05g01971 . . . . . . . . . . . . Cmo15g00931 . Cma15g00892 . Car15g00838 Cpe13g00425 . Bhi12g00960 . . . . . Lcy10g1599 Cla01g00650 . . . . . . Lsi09g00703 . Chy09g00808 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003119 0 2 1 0 0 2 2 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82389 PF03572 Peptidase_S41 1.30E-38 CL0127 Cone PK