Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0731 ATGTCGTCGCAATCCTCTCCTACTTCCACGGCGGCGTCTGACCAGCACGCGCCGCTCCTCCGCTCACGCCAATCCTCTTCCTCCTCTGATGGTCCAAGCTCCTCAGCTCCTCCCGCCACCCTTGCACTCCTCCTGGGCCGGGCCTCAGGACGCCGCGGCCCATCCATCTTGGTCCGAGAAACAGCGGCACGGCAGCTGGAGGAGAGGCGAGCGGACTGGGCCTATTCTAAGCCGGTGGTGGCTCTCGACATGATGTGGAACACAGCTTTCGTAGTCGTTTCGATCGGTATGCTTATTTCCACTGTTAATGAGCAGCCTGACACACCGATTCGGCTCTGGATCTGTGGCTATGCGTTACAGTGTTTGGTCCACGTGGTACTCGTCTGGATTGAGTACAGGAGGAGGAGCGTGAGAAGGACTCGGGATTTGGAGGGCCCGCAGCAAGGTGGAGATGATAATGGCGGTGCTGTTGCTGCTCCTTCTAATGACAGTGAGGATGATGATATGAACTCAAGGGTTTTGTCTAGTTCGAGCCAGTCCAGCATTACTAAACGATGCGAGTCCATAAACACAATGGCATCGTTTCTCTGGTGGATAGTCGGCTTTTACTGGGTACTCTCAGGTGGAGATAGCCTTATGATAAACGCTCCTCATTTATACTGGTTGGCTGTAATCTTTCTAGCATTTGATGTATTCTTCGCCTTATTCTGTGTCGTTTTGGCATGTCTAATCGGGATCGCTCTCTGTTGCTGCTTGCCTTGCATCATTGCCATTCTATATGCTGTTGCTGGTCAGGAAGGTGCATCGGAAGCGGATCTAAGTGCCCTTCCTAAATATAGATTCAAGACATCTAACAACGAAGAGAAGCCCAGTGTGGGGGCTGGGACTATGATTCCTGTTGAAACGAGCAGTGGGTACTTGGCAACCGAACAAGTACTTCTAAACGAGGATGCAGAGTGCTGTATCTGCCTGAGCTCATATGAAGATGGAGCAGAGCTCCATGCTCTTCCCTGCAACCATCACTTCCATTCTTCCTGTATTGTTAAATGGCTCAAGATGAATGCCACGTGTCCTCTCTGCAAGTATAACATTCTCAAGGGATTCGAGCAGGTATAG 1116 51.43 MSSQSSPTSTAASDQHAPLLRSRQSSSSSDGPSSSAPPATLALLLGRASGRRGPSILVRETAARQLEERRADWAYSKPVVALDMMWNTAFVVVSIGMLISTVNEQPDTPIRLWICGYALQCLVHVVLVWIEYRRRSVRRTRDLEGPQQGGDDNGGAVAAPSNDSEDDDMNSRVLSSSSQSSITKRCESINTMASFLWWIVGFYWVLSGGDSLMINAPHLYWLAVIFLAFDVFFALFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSALPKYRFKTSNNEEKPSVGAGTMIPVETSSGYLATEQVLLNEDAECCICLSSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGFEQV 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6018946 6020992 - Conep19aG0075200.1 Cone19ag0731 459168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0731 371 MobiDBLite consensus disorder prediction 1 37 - -
Cone19ag0731 371 SUPERFAMILY RING/U-box 307 366 - -
Cone19ag0731 371 MobiDBLite consensus disorder prediction 1 36 - -
Cone19ag0731 371 ProSiteProfiles Zinc finger RING-type profile. 320 361 IPR001841 -
Cone19ag0731 371 SMART ring_2 320 360 IPR001841 -
Cone19ag0731 371 Pfam Ring finger domain 319 361 IPR001841 -
Cone19ag0731 371 MobiDBLite consensus disorder prediction 141 176 - -
Cone19ag0731 371 CDD RING-H2_PA-TM-RING 319 361 - -
Cone19ag0731 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 367 IPR013083 -
Cone19ag0731 371 PANTHER TARGET OF ERK KINASE MPK-1 44 364 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cone19ag0731 371 FunFam E3 ubiquitin protein ligase RIE1 300 368 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1101 Cone-Chr18:8039895 Cone19ag0731 Cone-Chr19:6018946 7.14E-100 dispersed
Cone19ag0604 Cone-Chr19:5329125 Cone19ag0731 Cone-Chr19:6018946 2.28E-90 dispersed
Cone19ag0731 Cone-Chr19:6018946 Cone9ag0760 Cone-Chr9:3637166 9.46E-118 dispersed
Cone13ag0728 Cone-Chr13:7016575 Cone19ag0731 Cone-Chr19:6018946 1.93E-211 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0731 - - - 0.0