Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0738 ATGGCTTCTTTGCAGAGGATTGGTCAGTCGGGCGGAACTGTCAGTGCGGTTAGTTACGGCTCCGGTAAATGCGGTTCTGAATTGGTGGCTTCCGATCAATTTCCGGTGGGATTACGGGTTCTCGTTGTGGACGATGACGCTACTTGCTTGAGGGTTTTGGATAAGATGCTTCGTCGCTGCCTTTATACTGTCACCTCTTGCTCCCAGGCTACTGTTGCATTGGACCTTCTGCGTGAGAAGAAAGGTGGTTTTGATGTTGTATTGAGTGATGTTCATATGCCTGATATGGACGGATTCAAACTCCTTGAATATATTGGGCTAGAAATGGACCTCCCTGTTATCATGATGTCTGCTGATGGGAGAACAAGCGCGGTAATGAAAGGGATCAGACATGGAGCTTGTGATTATTTGATTAAGCCCATACGCGAAGAAGAGCTCAAGAATATTTGGCAACATGTAGTGAGAAAAAAGTGGACTGAAAATAAGGAGCCTGAAAATTCAGGCAGCTTGGGAGATAATGAACGGTCAAGACGAGGGAATGATGATTCTGCTGAAAATGCTTCTTCTGGTAATGAAGGAACAGAAGGAATTCCAAGAGTTCAGAGAAAGAGGAGCAATGCCAAGGAAGATGATGGCGAATTGGAAAATGAAGACCCTTCATCGTCAAAAAAACCACGTGTAGTGTGGTCAGTGGAGCTGCATCAGCAATTCGTGAGCGCTGTGAACCAACTTGGGCTTGAAAAGGCTGTGCCGAAGAGAATTCTGGAACTGATGAATGTACCTGGTTTGACAAGGGAGAATGTTGCGAGTCATCTGCAGAAGTTCCGGCTATATTTGAAGAGACTAAGTGGAGTTGCTCAGCAACAAAATGTCATCTCCAATCCCTATTGTGGGGCAATAGAACCCCATGTTAATGCGGGCGCCTTTGGAATCCAAAATTTGGCTCCCTCTGGCAGCCAAATTCCTCCACAAACTCTAGCAGCCCTTCATGCTGAGCTTTTAGGGCAGCCAAATAGCAACCTAATCGACCAGCCTGCGCTTCTGCAAGCATCCCTACATGGAACCAATAATATCCTAGTTGGACAGGGTGTCTCATACGGTCAGCCTTCAGTAACATTCCTACCCAACATTTCCAAGCATTATCAACCATCCAACATGCCTTTTGAGGATGTTTCTTCAGGCAACAGAGTATGGCAACAATGCAACAACCTTGGTCCCATAGGATCCAACAATCTTGGAGGATTGAGTCCCCAGAATAGTAACATGCTACTAGGTGTACTACAGCAGCAGCAAAGAAATCAGTACTCTGTTGCATCTGAACCTAGCCATTCAATTAATGTGCAACCATCATGCCTAGTCATTCCCTCTCATCAATCATCTACCAGTTTTCAGGCAGGAAACAGTCCTGCATCTGTTAATCAGAATTTAAGCTATAATAAGAGTTCTGTTATTGATTATACCCTTATCCCACCTCAATCAAATAATTCCTTGTTAAATATTGGACAAGTCTCAGGAAGGGATTTAAAAAATATGAGTATACTCACTGGTTATACAGCTCCAAGGTCTATTTCTCCTTCTGCATCATCTTCCTCAGTAAATGCTGGCAACAGCAATGGTCCGAATGTTCAAAACTCAACCTTAACATTTACTGCAAGAAAATTTCCTGGGCCTGCTGTTAATATTCGTGATATCCAGGGTTCTTCATATGGTTCAAGATCTGGCGAAGGGCTTGATCAGGGTCCTCTTCAAAATCTTGGCTTTGTTGGTAAAGGGACAATTATTCCAAGCCGGTATGCTGTGGATGAATTTGAAGCACCAATAAGCAACTTGGCTCATGATAATGTTAATAGGGTAAAACAAGAGCCCAGTATGGAATTTGTGGATAGTGAAAAAATGGGCATCCCATTGTTAAAGCAATCTCCTAATGATCTCATGGGTGTTTTTCTCGAATAG 1953 43.68 MASLQRIGQSGGTVSAVSYGSGKCGSELVASDQFPVGLRVLVVDDDATCLRVLDKMLRRCLYTVTSCSQATVALDLLREKKGGFDVVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSADGRTSAVMKGIRHGACDYLIKPIREEELKNIWQHVVRKKWTENKEPENSGSLGDNERSRRGNDDSAENASSGNEGTEGIPRVQRKRSNAKEDDGELENEDPSSSKKPRVVWSVELHQQFVSAVNQLGLEKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNVISNPYCGAIEPHVNAGAFGIQNLAPSGSQIPPQTLAALHAELLGQPNSNLIDQPALLQASLHGTNNILVGQGVSYGQPSVTFLPNISKHYQPSNMPFEDVSSGNRVWQQCNNLGPIGSNNLGGLSPQNSNMLLGVLQQQQRNQYSVASEPSHSINVQPSCLVIPSHQSSTSFQAGNSPASVNQNLSYNKSSVIDYTLIPPQSNNSLLNIGQVSGRDLKNMSILTGYTAPRSISPSASSSSVNAGNSNGPNVQNSTLTFTARKFPGPAVNIRDIQGSSYGSRSGEGLDQGPLQNLGFVGKGTIIPSRYAVDEFEAPISNLAHDNVNRVKQEPSMEFVDSEKMGIPLLKQSPNDLMGVFLE 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6052160 6056371 + Conep19aG0075900.1 Cone19ag0738 459175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0738 650 Gene3D - 38 169 - -
Cone19ag0738 650 ProSiteProfiles Response regulatory domain profile. 39 154 IPR001789 GO:0000160(InterPro)
Cone19ag0738 650 Pfam Response regulator receiver domain 40 148 IPR001789 GO:0000160(InterPro)
Cone19ag0738 650 NCBIfam myb-like DNA-binding domain, SHAQKYF class 224 277 IPR006447 GO:0003677(InterPro)
Cone19ag0738 650 FunFam Two-component response regulator 220 283 - -
Cone19ag0738 650 CDD REC_typeB_ARR-like 40 154 - -
Cone19ag0738 650 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 386 IPR045279 GO:0009736(InterPro)
Cone19ag0738 650 MobiDBLite consensus disorder prediction 161 182 - -
Cone19ag0738 650 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 221 280 IPR017930 -
Cone19ag0738 650 SMART REC_2 38 150 IPR001789 GO:0000160(InterPro)
Cone19ag0738 650 Gene3D - 220 283 - -
Cone19ag0738 650 MobiDBLite consensus disorder prediction 519 545 - -
Cone19ag0738 650 Pfam Myb-like DNA-binding domain 226 275 IPR001005 -
Cone19ag0738 650 SUPERFAMILY CheY-like 37 163 IPR011006 -
Cone19ag0738 650 MobiDBLite consensus disorder prediction 161 225 - -
Cone19ag0738 650 SUPERFAMILY Homeodomain-like 222 281 IPR009057 -
Cone19ag0738 650 MobiDBLite consensus disorder prediction 197 222 - -
Cone19ag0738 650 FunFam Two-component response regulator 38 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1108 Cone-Chr13:8915265 Cone19ag0738 Cone-Chr19:6052160 1.72E-85 dispersed
Cone14ag0738 Cone-Chr14:4109366 Cone19ag0738 Cone-Chr19:6052160 2.24E-105 dispersed
Cone15ag0748 Cone-Chr15:4345184 Cone19ag0738 Cone-Chr19:6052160 7.58E-107 dispersed
Cone19ag0738 Cone-Chr19:6052160 Cone4ag1755 Cone-Chr4:12894931 2.28E-95 dispersed
Cone13ag0734 Cone-Chr13:7048594 Cone19ag0738 Cone-Chr19:6052160 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45325 PF07714 PK_Tyr_Ser-Thr 5.50E-17 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0738 - - - 0.0