Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0743 ATGTCTTCTTCTTCTTCTGTATCATCTGTGACAAGCCAAGAAGACGGTGAAAGGGCTATCACTTCCGATCATAACGTTCTGCAGAAACATGTTGCTTTTTTCGACAGGAACAAGGACGGCGTCGTTTACCCTTGGGAGACTTTTCAAGGTTTTCGTGCAATCGGGTGCGGCGTCCTCTTGTCAGCAGCTAGTGCTTTCCTCATCAATGCTTTTCTCAGCCAAAAAACTCGCCCTGGAAAGTTCCCATCTCTACTATTTCCGATCGAGGTAAAGAATATTCACAAAGCCAAACATGGGAGTGACTCCGGCATATATGATACAGAAGGAAGGTTTGTTGGTTCCAAGTTCGAAGAGATATTCAGCAAGAATTCTCAATCTCATGCCGACGCCTTGACCTCTAATGAGCTAATGGGAATGCTAAAGGCAAACCGAGAGCCTAAGGACTACAAAGGATGGCTTGCTAGCTGGACAGAATGGAAGATCCTTTACATGCTCTGCAAAGACAAGAATGGCTTACTCCATAAAGACACTATCAAGGCTGTTTATGATGGAAGCTTGTTTGAGCTCATGGAGAATCAAACATCTTCAGCTAAAAACAAAGCCTGTTAG 609 44.17 MSSSSSVSSVTSQEDGERAITSDHNVLQKHVAFFDRNKDGVVYPWETFQGFRAIGCGVLLSAASAFLINAFLSQKTRPGKFPSLLFPIEVKNIHKAKHGSDSGIYDTEGRFVGSKFEEIFSKNSQSHADALTSNELMGMLKANREPKDYKGWLASWTEWKILYMLCKDKNGLLHKDTIKAVYDGSLFELMENQTSSAKNKAC 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6064158 6065828 - Conep19aG0076400.1 Cone19ag0743 459180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0743 202 MobiDBLite consensus disorder prediction 1 21 - -
Cone19ag0743 202 Pfam Caleosin related protein 23 189 IPR007736 -
Cone19ag0743 202 PANTHER PEROXYGENASE 3-RELATED 12 196 IPR007736 GO:0004497(PANTHER)|GO:0005509(PANTHER)
Cone19ag0743 202 MobiDBLite consensus disorder prediction 1 16 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0743 K17991 - - mdm:103430617 300.056
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0184 Cone-Chr15:876134 Cone19ag0743 Cone-Chr19:6064158 6.98E-58 dispersed
Cone10ag0632 Cone-Chr10:3034771 Cone19ag0743 Cone-Chr19:6064158 9.36E-52 transposed
Cone13ag0738 Cone-Chr13:7059187 Cone19ag0743 Cone-Chr19:6064158 3.61E-123 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0738 . 5 189 Pollen Coat Proteome AT1G23240 58.4 2.5e-59 226.1
Cone19ag0743 . 26 200 Pollen Coat Proteome AT1G23240 59.4 4.7e-58 221.9
Cone13ag0738 . 5 189 Pollen Coat Proteome AT1G23240 58.4 2.5e-59 226.1
Cone19ag0743 . 26 200 Pollen Coat Proteome AT1G23240 59.4 4.7e-58 221.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007695 2 1 0 0 3 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 1 2 1 1 36