Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone19ag0775 | ATGGCCGGTGGCGTCGTCGGAGATGGCGACCGGATTCCTCCGGCCAGTGTACTACTCGACCTAGTCAACGACATCGTTCGGATTTCGGCGGGAACTTCCGGCAATACCAACACCACTGCCTCCGGCGATGTCTTCAAGAAAGACTGCACCGATCTGGTCCGTCGGATCGCGCTTCTGACTCACTTATTTGATGAGATGACGAACTTGGAGGTGGACGATCCTCGGCGGGCAAATGTCACCTTTTCTTCTTCTTCGACTACTACTAGTACTAATGCTGCTGCCGGTAATACTAAAGTGGAGTCATTTCCATGGCTGTCCGATCTGATGGTGGCTCTGAAGGCTGCCAAGCACCTCCTTTTCATCGTCGGGGCGTTCCGTTCTAGCAACGACTCCTCTGATGGAGCTTCCAAGAAAATAGCCTTCTGGTTTCAATGTGTGACGTTAAAGTTAGAGAAAGCATTGGGAAATCTGCCATATGCTCGCTTGAATATCTCAGAAGAAGTTGAAGAACAGGTTGAATTGGTAAGAGCCCAGTTGAAAAGAGCTGCAGAAAAATTTGGATCTCTAACTTCAGCAGCAATTGCTCTAGCCCACCCGCTGGACAGAGAAATAAATCTTTCAGTATCTGAAAACTGGGAAAATGACTTTTGTCTAGAGAACATTGGTACTATAAATGATGAAGTTACACTCAAGTTGGATGCTCTTCCCATTTGTGATGGTTTGATCGGCCAAAGTGTGGATCAAATAAATTGTGCATCAGAATGGCTGAGGAAAGTTCCTTCATCCTCTGAGGTCTGTTCGGATGATTCTCATTCTGACGATCAAGACAACTCTGCCAGCAAGAGCTTAGATGACATTAAGAAGCCTGATCCAGTTGCGATTCCTGAGGATTTCTTATGCCCTATTTCCCTGGAATTAATGAGGGATCCTGTTATTGTGGCGACAGGACAGACATATGAGAGGTCTTACATACAGAGGTGGATTGATTGCGGAAATCTTACTTGCCCTAAAACTCAACAGAAGCTCCAAAATTTTACACTGACCCCAAATTACGTTTTGAGAAGCCTTATCTCACAGTACTGTGTTCAGCACAATATAGAGCAACCAGCAGTATTAACTAATGGTAGAATAAAAAAGATTGATGGATCATATCGTGATGTTTGTGGAGAGATAGCAGCCATTGGAGCTCTTGTCCGGAAGCTCTCTAGCCATTCCATTGAGGAGCAGAGATCTGCTGTTGCAGAAATCCGATCTCTTTCAAAGAGAAGCACGGATAACAGAATACTAATAGCAGAAGCGGGAGCAATTCCAGCTCTAGTCAACCTCTTAACTTCAGACGATGTATTAATACAAGAAAATTCTGTCACCTCTATCCTCAACCTTTCTATATACGAAAATAACAAGGGACTTATTATGCTAGCAGGGGCAGTTCCTTCTATTGTCCAAGTCCTAAGAGTAGGAAGCATGGAAGCTCGAGAAAATGCAGCGGCGACGTTTTTTAGCTTGTCGCTTGCAGATGAGAACAAGATAATTATAGGTGCATCAGGGGCAATTCCAGCATTAGTGGAATTGCTCCAAAGTGGAAGCCTGAGAGGGCAAAAGGATGCTGCAACGGCTCTGTTCAATTTATGCATCTATCAAGGAAACAAGGGTAGGGCAGTAAGGTCTGGGATCGTTTCTGCATTATTGAAAATGCTAACGGATTCAAGTAACTGCATGGTTGATGAAGCTTTGACTATAATGTCTGTTCTTGCAAGTCATCAAGATGCAAAGGCTGCCCTTGTAAAAGCTAGAACTATTCCTGTCTTGATTGATCTTCTTAGGACAGGTCTACCTAGGAACAAGGAAAATGCGGCTGCAATTTTACTTGCCTTGTGCAAAAGAGATCCAGAAAATCTTGCCTGTATAAGTAGGCTCGGGGCTGTTATTCCTTTGACCGAGCTTACTAGGAGTGGGACGGAGAGAGCCAGAAGGAAAGCTACTTCTTTATTGGAGCATCTTAGAACGTCACAGCATCTCTAA | 2022 | 44.51 | MAGGVVGDGDRIPPASVLLDLVNDIVRISAGTSGNTNTTASGDVFKKDCTDLVRRIALLTHLFDEMTNLEVDDPRRANVTFSSSSTTTSTNAAAGNTKVESFPWLSDLMVALKAAKHLLFIVGAFRSSNDSSDGASKKIAFWFQCVTLKLEKALGNLPYARLNISEEVEEQVELVRAQLKRAAEKFGSLTSAAIALAHPLDREINLSVSENWENDFCLENIGTINDEVTLKLDALPICDGLIGQSVDQINCASEWLRKVPSSSEVCSDDSHSDDQDNSASKSLDDIKKPDPVAIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNLTCPKTQQKLQNFTLTPNYVLRSLISQYCVQHNIEQPAVLTNGRIKKIDGSYRDVCGEIAAIGALVRKLSSHSIEEQRSAVAEIRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENSVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATFFSLSLADENKIIIGASGAIPALVELLQSGSLRGQKDAATALFNLCIYQGNKGRAVRSGIVSALLKMLTDSSNCMVDEALTIMSVLASHQDAKAALVKARTIPVLIDLLRTGLPRNKENAAAILLALCKRDPENLACISRLGAVIPLTELTRSGTERARRKATSLLEHLRTSQHL | 673 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 6313333 | 6316766 | - | Conep19aG0079700.1 | Cone19ag0775 | 459212 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone19ag0775 | 673 | FunFam | RING-type E3 ubiquitin transferase | 573 | 672 | - | - | |
Cone19ag0775 | 673 | FunFam | RING-type E3 ubiquitin transferase | 377 | 470 | - | - | |
Cone19ag0775 | 673 | FunFam | RING-type E3 ubiquitin transferase | 471 | 571 | - | - | |
Cone19ag0775 | 673 | SMART | Ubox_2 | 297 | 360 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone19ag0775 | 673 | CDD | RING-Ubox_PUB | 295 | 347 | IPR045210 | - | |
Cone19ag0775 | 673 | SMART | arm_5 | 505 | 545 | IPR000225 | GO:0005515(InterPro) | |
Cone19ag0775 | 673 | SMART | arm_5 | 629 | 669 | IPR000225 | GO:0005515(InterPro) | |
Cone19ag0775 | 673 | SMART | arm_5 | 546 | 586 | IPR000225 | GO:0005515(InterPro) | |
Cone19ag0775 | 673 | SMART | arm_5 | 464 | 504 | IPR000225 | GO:0005515(InterPro) | |
Cone19ag0775 | 673 | SMART | arm_5 | 423 | 463 | IPR000225 | GO:0005515(InterPro) | |
Cone19ag0775 | 673 | SMART | arm_5 | 587 | 627 | IPR000225 | GO:0005515(InterPro) | |
Cone19ag0775 | 673 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 434 | 476 | IPR000225 | GO:0005515(InterPro) | |
Cone19ag0775 | 673 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 292 | 366 | IPR013083 | - | |
Cone19ag0775 | 673 | FunFam | RING-type E3 ubiquitin transferase | 291 | 367 | - | - | |
Cone19ag0775 | 673 | PANTHER | U BOX DOMAIN-CONTAINING | 43 | 669 | - | - | |
Cone19ag0775 | 673 | Pfam | U-box domain | 294 | 365 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone19ag0775 | 673 | Coils | Coil | 165 | 185 | - | - | |
Cone19ag0775 | 673 | MobiDBLite | consensus disorder prediction | 267 | 289 | - | - | |
Cone19ag0775 | 673 | Pfam | Armadillo/beta-catenin-like repeat | 423 | 462 | IPR000225 | GO:0005515(InterPro) | |
Cone19ag0775 | 673 | Pfam | Armadillo/beta-catenin-like repeat | 506 | 544 | IPR000225 | GO:0005515(InterPro) | |
Cone19ag0775 | 673 | ProSiteProfiles | U-box domain profile. | 293 | 367 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone19ag0775 | 673 | Gene3D | - | 469 | 576 | IPR011989 | - | |
Cone19ag0775 | 673 | Gene3D | - | 367 | 468 | IPR011989 | - | |
Cone19ag0775 | 673 | Gene3D | - | 577 | 672 | IPR011989 | - | |
Cone19ag0775 | 673 | MobiDBLite | consensus disorder prediction | 263 | 289 | - | - | |
Cone19ag0775 | 673 | SUPERFAMILY | ARM repeat | 392 | 667 | IPR016024 | - | |
Cone19ag0775 | 673 | SUPERFAMILY | RING/U-box | 290 | 368 | - | - | |
Cone19ag0775 | 673 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 516 | 558 | IPR000225 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone19ag0775 | Cone-Chr19:6313333 | Cone5ag0357 | Cone-Chr5:1515471 | 4.43E-56 | dispersed | |
Cone11ag0256 | Cone-Chr11:1235455 | Cone19ag0775 | Cone-Chr19:6313333 | 4.83E-16 | wgd | |
Cone13ag0773 | Cone-Chr13:7267140 | Cone19ag0775 | Cone-Chr19:6313333 | 4.26E-290 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone19ag0775 | - | - | - | 0.0 |