Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0775 ATGGCCGGTGGCGTCGTCGGAGATGGCGACCGGATTCCTCCGGCCAGTGTACTACTCGACCTAGTCAACGACATCGTTCGGATTTCGGCGGGAACTTCCGGCAATACCAACACCACTGCCTCCGGCGATGTCTTCAAGAAAGACTGCACCGATCTGGTCCGTCGGATCGCGCTTCTGACTCACTTATTTGATGAGATGACGAACTTGGAGGTGGACGATCCTCGGCGGGCAAATGTCACCTTTTCTTCTTCTTCGACTACTACTAGTACTAATGCTGCTGCCGGTAATACTAAAGTGGAGTCATTTCCATGGCTGTCCGATCTGATGGTGGCTCTGAAGGCTGCCAAGCACCTCCTTTTCATCGTCGGGGCGTTCCGTTCTAGCAACGACTCCTCTGATGGAGCTTCCAAGAAAATAGCCTTCTGGTTTCAATGTGTGACGTTAAAGTTAGAGAAAGCATTGGGAAATCTGCCATATGCTCGCTTGAATATCTCAGAAGAAGTTGAAGAACAGGTTGAATTGGTAAGAGCCCAGTTGAAAAGAGCTGCAGAAAAATTTGGATCTCTAACTTCAGCAGCAATTGCTCTAGCCCACCCGCTGGACAGAGAAATAAATCTTTCAGTATCTGAAAACTGGGAAAATGACTTTTGTCTAGAGAACATTGGTACTATAAATGATGAAGTTACACTCAAGTTGGATGCTCTTCCCATTTGTGATGGTTTGATCGGCCAAAGTGTGGATCAAATAAATTGTGCATCAGAATGGCTGAGGAAAGTTCCTTCATCCTCTGAGGTCTGTTCGGATGATTCTCATTCTGACGATCAAGACAACTCTGCCAGCAAGAGCTTAGATGACATTAAGAAGCCTGATCCAGTTGCGATTCCTGAGGATTTCTTATGCCCTATTTCCCTGGAATTAATGAGGGATCCTGTTATTGTGGCGACAGGACAGACATATGAGAGGTCTTACATACAGAGGTGGATTGATTGCGGAAATCTTACTTGCCCTAAAACTCAACAGAAGCTCCAAAATTTTACACTGACCCCAAATTACGTTTTGAGAAGCCTTATCTCACAGTACTGTGTTCAGCACAATATAGAGCAACCAGCAGTATTAACTAATGGTAGAATAAAAAAGATTGATGGATCATATCGTGATGTTTGTGGAGAGATAGCAGCCATTGGAGCTCTTGTCCGGAAGCTCTCTAGCCATTCCATTGAGGAGCAGAGATCTGCTGTTGCAGAAATCCGATCTCTTTCAAAGAGAAGCACGGATAACAGAATACTAATAGCAGAAGCGGGAGCAATTCCAGCTCTAGTCAACCTCTTAACTTCAGACGATGTATTAATACAAGAAAATTCTGTCACCTCTATCCTCAACCTTTCTATATACGAAAATAACAAGGGACTTATTATGCTAGCAGGGGCAGTTCCTTCTATTGTCCAAGTCCTAAGAGTAGGAAGCATGGAAGCTCGAGAAAATGCAGCGGCGACGTTTTTTAGCTTGTCGCTTGCAGATGAGAACAAGATAATTATAGGTGCATCAGGGGCAATTCCAGCATTAGTGGAATTGCTCCAAAGTGGAAGCCTGAGAGGGCAAAAGGATGCTGCAACGGCTCTGTTCAATTTATGCATCTATCAAGGAAACAAGGGTAGGGCAGTAAGGTCTGGGATCGTTTCTGCATTATTGAAAATGCTAACGGATTCAAGTAACTGCATGGTTGATGAAGCTTTGACTATAATGTCTGTTCTTGCAAGTCATCAAGATGCAAAGGCTGCCCTTGTAAAAGCTAGAACTATTCCTGTCTTGATTGATCTTCTTAGGACAGGTCTACCTAGGAACAAGGAAAATGCGGCTGCAATTTTACTTGCCTTGTGCAAAAGAGATCCAGAAAATCTTGCCTGTATAAGTAGGCTCGGGGCTGTTATTCCTTTGACCGAGCTTACTAGGAGTGGGACGGAGAGAGCCAGAAGGAAAGCTACTTCTTTATTGGAGCATCTTAGAACGTCACAGCATCTCTAA 2022 44.51 MAGGVVGDGDRIPPASVLLDLVNDIVRISAGTSGNTNTTASGDVFKKDCTDLVRRIALLTHLFDEMTNLEVDDPRRANVTFSSSSTTTSTNAAAGNTKVESFPWLSDLMVALKAAKHLLFIVGAFRSSNDSSDGASKKIAFWFQCVTLKLEKALGNLPYARLNISEEVEEQVELVRAQLKRAAEKFGSLTSAAIALAHPLDREINLSVSENWENDFCLENIGTINDEVTLKLDALPICDGLIGQSVDQINCASEWLRKVPSSSEVCSDDSHSDDQDNSASKSLDDIKKPDPVAIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNLTCPKTQQKLQNFTLTPNYVLRSLISQYCVQHNIEQPAVLTNGRIKKIDGSYRDVCGEIAAIGALVRKLSSHSIEEQRSAVAEIRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENSVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATFFSLSLADENKIIIGASGAIPALVELLQSGSLRGQKDAATALFNLCIYQGNKGRAVRSGIVSALLKMLTDSSNCMVDEALTIMSVLASHQDAKAALVKARTIPVLIDLLRTGLPRNKENAAAILLALCKRDPENLACISRLGAVIPLTELTRSGTERARRKATSLLEHLRTSQHL 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6313333 6316766 - Conep19aG0079700.1 Cone19ag0775 459212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0775 673 FunFam RING-type E3 ubiquitin transferase 573 672 - -
Cone19ag0775 673 FunFam RING-type E3 ubiquitin transferase 377 470 - -
Cone19ag0775 673 FunFam RING-type E3 ubiquitin transferase 471 571 - -
Cone19ag0775 673 SMART Ubox_2 297 360 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone19ag0775 673 CDD RING-Ubox_PUB 295 347 IPR045210 -
Cone19ag0775 673 SMART arm_5 505 545 IPR000225 GO:0005515(InterPro)
Cone19ag0775 673 SMART arm_5 629 669 IPR000225 GO:0005515(InterPro)
Cone19ag0775 673 SMART arm_5 546 586 IPR000225 GO:0005515(InterPro)
Cone19ag0775 673 SMART arm_5 464 504 IPR000225 GO:0005515(InterPro)
Cone19ag0775 673 SMART arm_5 423 463 IPR000225 GO:0005515(InterPro)
Cone19ag0775 673 SMART arm_5 587 627 IPR000225 GO:0005515(InterPro)
Cone19ag0775 673 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515(InterPro)
Cone19ag0775 673 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 366 IPR013083 -
Cone19ag0775 673 FunFam RING-type E3 ubiquitin transferase 291 367 - -
Cone19ag0775 673 PANTHER U BOX DOMAIN-CONTAINING 43 669 - -
Cone19ag0775 673 Pfam U-box domain 294 365 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone19ag0775 673 Coils Coil 165 185 - -
Cone19ag0775 673 MobiDBLite consensus disorder prediction 267 289 - -
Cone19ag0775 673 Pfam Armadillo/beta-catenin-like repeat 423 462 IPR000225 GO:0005515(InterPro)
Cone19ag0775 673 Pfam Armadillo/beta-catenin-like repeat 506 544 IPR000225 GO:0005515(InterPro)
Cone19ag0775 673 ProSiteProfiles U-box domain profile. 293 367 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone19ag0775 673 Gene3D - 469 576 IPR011989 -
Cone19ag0775 673 Gene3D - 367 468 IPR011989 -
Cone19ag0775 673 Gene3D - 577 672 IPR011989 -
Cone19ag0775 673 MobiDBLite consensus disorder prediction 263 289 - -
Cone19ag0775 673 SUPERFAMILY ARM repeat 392 667 IPR016024 -
Cone19ag0775 673 SUPERFAMILY RING/U-box 290 368 - -
Cone19ag0775 673 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0775 Cone-Chr19:6313333 Cone5ag0357 Cone-Chr5:1515471 4.43E-56 dispersed
Cone11ag0256 Cone-Chr11:1235455 Cone19ag0775 Cone-Chr19:6313333 4.83E-16 wgd
Cone13ag0773 Cone-Chr13:7267140 Cone19ag0775 Cone-Chr19:6313333 4.26E-290 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0775 - - - 0.0