Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0795 ATGGGGGACGGAGAGAAGAGCATGGAAGAGAGGCTGTTGCCGGTACAGGAAGAAGAGGAAAATCATGGAGGAGGAGGAGGAGGAAGTGCGAGTTTAAACTGGCGAGATGCCTTCTTTCACGAGGTGAAGACGGTAGGGTTTATAGCAGCTCCAATGGTGGCCGTGGTTCTATCTCAGTATTCCGTACAGGTGATTTCGATGATGATGGTTGGACATCTTGGAGAGCTTGCTCTCTCTAGCTCCGCCATCGCTGTTTCGCTTTCTGGAGTTACTGGCTTTAGTTTTCTTCTAGGCATGGCTAGTGCTCTTGAAACACTATGCGGACAAGCTTATGGAGCACAACAATATCGAAAACTTGGAACTCAGACTTACACTGCTATATTCTCTCTTACCTTAGTCTGCCTACCTCTATCTTTAATATGGATCTACATGGAAAAGATACTCATTTTTCTTGGACAAGATCCTCTAATTGCACACGAAGCTGGAAAATTCACTATTTGGCTAATTCCTGGGCTATTTGCTTATGCATCTCTTCAACCGCTTGTGAGATATTTTCAGACGCAAAGCATAATCGTTCCCATGGTCATATGTTCTAGTGTTACCCTTTGCTTCCATATTCCTCTATGTTGGGCTCTTGTGTTCAAGTCTGGACTTGGACAGGTTGGAGGTGCACTTGCGATCAGCATTTCATATTGGTTGAATGTGATTTTGTTTGTATCTTACATGAAACTATCTCCTGCCTGTGCAAAAACTCGTGGTAAAATTTCAATGGAGTTATTCCATGGAATCGGAGAGTTCTTTCGGTTTGCAATCCCTTCTGCAATAATGGTTTGCCTTGAATGGTGGTCCTTTGAGCTGTTGATCTTGTTATCTGGGCTACTGCCTAATCCAGAGCTTGAAACCTCAATTTTGTCTGTATGTCTCACGACAATCTCCACACTATATGCTATACCATATGGAATTGGAGCTGCGGGAAGCACTAGAGTTTCAAATGAAATAGGAGCAGGAAACCCAAGAGCTGCTCGTATTGCAACTTGTGCAGTGATGTTTATTGCAGTTGTAGAAGCAAGTCTAGTAAGTATAACCCTCTTTGCCAGTAGGAGTGTTTTCGGCTACCTCTTCAGCAACGAGAAGGAAGTCGTAGATTATGTCACAACTATGGCTCCCTTAGTTTGTTTATCTGTCATTCTAGATAGCCTTCAAGGGGTACTTTCAGGTATTGCTAGGGGATGTGGGTGGCAGCACATAGGGGCTTATATCAACTTAGGAGCATTTTATCTATGCGGTATCCCAGTTGCTGCAATTCTAGGCTTCTGGGTACATCTCAATGGAAGGGGCTTGTGGATTGGCATTCAAGTCGGGGCATTTATGCAAAGTCTGATGCTTTCAATCGTCACAAGCCGAATTGATTGGGAAAAACAGGCAAATAAGGCAAGGGAGAGGTTATTTGAGGGAAGATATTCAGGAGACAAAGGATTGATCAACTGA 1488 43.75 MGDGEKSMEERLLPVQEEEENHGGGGGGSASLNWRDAFFHEVKTVGFIAAPMVAVVLSQYSVQVISMMMVGHLGELALSSSAIAVSLSGVTGFSFLLGMASALETLCGQAYGAQQYRKLGTQTYTAIFSLTLVCLPLSLIWIYMEKILIFLGQDPLIAHEAGKFTIWLIPGLFAYASLQPLVRYFQTQSIIVPMVICSSVTLCFHIPLCWALVFKSGLGQVGGALAISISYWLNVILFVSYMKLSPACAKTRGKISMELFHGIGEFFRFAIPSAIMVCLEWWSFELLILLSGLLPNPELETSILSVCLTTISTLYAIPYGIGAAGSTRVSNEIGAGNPRAARIATCAVMFIAVVEASLVSITLFASRSVFGYLFSNEKEVVDYVTTMAPLVCLSVILDSLQGVLSGIARGCGWQHIGAYINLGAFYLCGIPVAAILGFWVHLNGRGLWIGIQVGAFMQSLMLSIVTSRIDWEKQANKARERLFEGRYSGDKGLIN 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6413602 6416279 - Conep19aG0081700.1 Cone19ag0795 459232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0795 495 CDD MATE_eukaryotic 41 477 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Cone19ag0795 495 PANTHER MULTIDRUG RESISTANCE PROTEIN 35 474 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Cone19ag0795 495 Pfam MatE 51 210 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone19ag0795 495 Pfam MatE 272 435 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone19ag0795 495 NCBIfam MATE family efflux transporter 51 448 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0795 K03327 - - mdm:103451604 726.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0795 Cone-Chr19:6413602 Cone6ag0155 Cone-Chr6:772311 1.26E-112 dispersed
Cone6ag0154 Cone-Chr6:771290 Cone19ag0795 Cone-Chr19:6413602 1.49E-21 dispersed
Cone13ag0332 Cone-Chr13:2775449 Cone19ag0795 Cone-Chr19:6413602 3.71E-163 transposed
Cone14ag0593 Cone-Chr14:2937451 Cone19ag0795 Cone-Chr19:6413602 1.52E-183 transposed
Cone2ag0629 Cone-Chr2:4035873 Cone19ag0795 Cone-Chr19:6413602 9.30E-148 transposed
Cone2ag0747 Cone-Chr2:33264065 Cone19ag0795 Cone-Chr19:6413602 5.38E-142 transposed
Cone19ag0795 Cone-Chr19:6413602 Cone9ag0440 Cone-Chr9:2035644 2.34E-220 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g385 . . . . . . . . . . . . . . . . . Bhi07g01255 . . . Hepe01g1150 . . . . . . . . . . Cone19ag0795 . . Lsi04g00208 Csa05g02659 . Cme10g00212 . . . . . . . . . . . . . . . . Cpe04g01386 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001043 2 6 4 2 3 1 0 1 1 2 0 1 2 3 3 2 1 3 3 1 3 1 4 6 6 3 3 7 5 3 82