Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0798 ATGAAGGACCGGCCTCCTTCATCGTACGGCGCCGTCTATGTTCCTCCTCATCATCGCCTCCGCTCCGTTATTTCTTCTCCGAATTACATCTCTCCTTCTTCTGCTATCGATTCTAAGCTCCGTGAAACCCACACTGCGGCTGTTGTAAAGCCAAAAACCACTACTCTTTCTTACACGCAAACTCAGGAGCAGCTCCCTAAGGGGATTTCTAACTCGAATTTGAATTCTTATACTGCGCAATATAAATCGGCGTTTGACGATGGGGTTTCTGAGGAAGGCTCAGATCATGAACTTGACTCAGCTTGGCCACAAGTTGATTCATCATTGACCAGCATTGATGAGTGGAAAAGGAAGCTGACCTTACTTCTTAGGGACAAGGAGAAGCAGGAATTGGTTACAAGGGAGAGAAAGGATAGACGTGATTTTGAGCAAATAGCAGCTTTGGCTAGCAGAATGGGGCTGTTTAGCCATCTTTATGCCAAAGTTGCTGTTTTTAGTAAGGTCCCTTTGCCCAACTACAGATTTGATTTGGATGATAAGCGCCCACAGAGAGAGGTAACTCTGCCTGTTGGGTTGCTAAGAAGAGTTGATGCCCATCTTAGGGAGTATCTCTTTCAAAAATCCAGGTTCAAAGAAAGTTTATCTAATACTTCTTTCTCACGATCAAGCAGTAGTGGTAGTATGGCAACTGATGAGGGGCTTTTTGAACAACCTGAGCAACTACCTTCAAGTAAAGCCATGACAGAGAAAATTACTTCACGGAGAAGTTTGCATCTGCTTGACCAGCAATTCTCTTGGCAGAAATCTTCTGAAGGTAGAATGATGCTGGAATTTCGCAAAAGTCTTCCTGCTTATAAGGCGAAGGATGCTCTATTAACTGCCATTTCGCAGAACCAGGTTGTAATAATCTCAGGTGAAACTGGTTGTGGCAAGACCACACAAGTTCCCCAATTCATTTTAGAATCTGAGATCGAGTCTTTTTGTGGAGCTGCTTGTAGCATTATATGCACACAGCCAAGAAGAATATCTGCTATGTCTGTATCAGAAAGAGTTGCAGCAGAGAGAGGGGAGAAATTGGGTGAATCTGTTGGTTATAAAGTTCGGTTGGAGGGAATTAAAGGGAGGGATACTCACCTTCTCTTTTGCACCACTGGCATCTTATTGAGAAGATTGCTGGTTGATAGAAGTTTGAAGGGTGTAACTCATGTTATTGTTGATGAGATTCATGAACGTGGAATGAATGAAGATTTTCTGCTTATCGTCCTTAAAGATCTTCTTCCACGGAAACCAGAGCTAAGATTGATTCTGATGAGTGCAACTTTAGATGCAGAGCTTTTCTCTTCCTACTTTGGTGGGGCTCAAACAATTAACATTCCTGGATTTACATACCCTGTTCGAACTCATTTTCTGGAGGATATTCTGGAAACTACTGGTTACAGTTTAACCCCATTCAATCAAGTTGATGATTATGGTCAAGAAAGGAACTGGAAAATGAGCAAACAGACCCCGGGAAAGAGGAAAAGTCAGATTGCTTCTGCTGTCGAGGATGCACTTAAAGGGGCTAATTTTCTGGAGTACAGCCGACAGACTCGGGAGTATCTGTCATGCTGGAACCCTGATTGTATTGGTTTTAATCTCATAGAGTATCTTCTAGTCAACATATGTGAGAATGAAAAGCCTGGTGCTGTTCTAGTTTTTATGACCGGGTGGGATGACATAAGTTCTCTGAAGGATAAGCTCCAGGCTCATCCTTTCTTGGGGGATCCCCGCCATGTTTTGTTGCTGGCATGCCATGGCTCTATGGCTAGTTCAGAACAGAGGTTGATATTTGATGCACCTACAGAAGGAGTGAGGAAGATAGTCCTAGCTACAAATATTGCAGAGACTAGTATAACGATTAATGATGTTGTGTTTGTTCTTGACTGTGGTAAGGCAAAAGAAACGTCATATGATGCACTGAATAACACTCCGTGTTTGCTTCCTTCCTGGATATCCAAGGTTTCCGCTCAACAAAGAAGAGGAAGAGCAGGCCGTGTTCAGCCAGGTGAATGTTTTCATCTCTATCCAAGATGTGTGTATGACTCCTTTCCAGAGTATCAACTACCTGAGATCTTAAGAACGCCTCTTCAGTCCCTTTGTTTGCAAATAAAAAGTTTAAAGCTTGGAAGTATAACGGAGTTTCTATCTAGAGCTTTGCAGTCACCTGAGCGACTAGCGGTTCAGAATGCCATTGAATATTTAAAAATCATTGGGGCCTTAGATGAGAACGAAAACCTCACTGTTTTAGGACGCTATTTGACTATACTTCCCATGGAGCCAAAACTTGGGAAAATGCTTGTATTGGGTGCGATCTTCAATTGCCTGGATCCAATATTGACTATTGTTGCTGGGCTCAGCATTAGAGATCCTTTTTTGGCACCATTCGACAAGAAGGATCTTGCAGAGGCTGCTAAGTATCAGTTTTCCCAAGATCACAGTGACCACCTTGCACTAGTCCGGGCCTATGAGGGATATAAAGATGCTGAAAGAAATTATTCTGGATATGACTTCTGCTGGAAGAACTTTCTTTCACCACAATCAATGAAAGCTATTGATTCCTTGAGGAAGGAGTTCTTCTCTCTGCTCAGAGATACAGGTCTGGTTGATGGCAACCCAACCATCACACAGAATCTTGATCATAATCTAGTACGAGCAGTTATTTGCTATGGCCTATATCCTGGCATATGTTCTGTTGTGCATAATGAGAAGTCATTTACACTCAAGACTATGGAGGATGGCCAGGTGCTTCTATACTCGAACTCTGTTAATTCTCGGGAGTTAAGAATTCCTTATCCATGGCTGGTTTTCAATGAAAAGATAAAAGTGAACTCTGTTTTTCTTCGGGATTCAACAGCTGTCTGTGATTCTGTATTACTTCTACTTGGTGGAAGCATCTCAAAAGGGGATATTGATGGCGAATTGAAAATGTTGGGTGGATATTTGGAATTCTTCATGAAACCTGCCGTAGCAGATATGTATCTGAGTTTAAGAAGGAAACTAGAAGAGCTAATTCAGAAAAAACTACTTAATCCCCAGATGGACTTGCACTCCTACAATGAGCTCCTATCTGCAGTGTACTTGCTTATCTCAGAAGATCCATGTGAGGGAAGATTCATTTACAACCGTCAGATCCTCAAGACCTCCTCAAAGACATCTTCTAACCCACCACAATCATCACCCCTGATTTCACGAACCGAAAGCGGGCCTGGGGGGGACAACTCCAAGAGTCAGCTCCAAACATTGCTTACAAGAGCAGGGTGCAATGCACCCAGCTACAAGACCAAACAGTTAAAGAACAATCAGTTCCTAGCCACTGTGGAGTTTAACGGGATGCAAATCATGGGGCAGCCTTGTAGTAACAAGAAGACTGCAGAAAAAGATGCTGCAGCTGAAGCTATTCAATGGCTTATGGGTGGGGCCCAGGCCGGACACCACTATATCAATAACATGTCCATGTTGATCAAGAAAAGCAAGAGGGATCACAACTAA 3528 42.91 MKDRPPSSYGAVYVPPHHRLRSVISSPNYISPSSAIDSKLRETHTAAVVKPKTTTLSYTQTQEQLPKGISNSNLNSYTAQYKSAFDDGVSEEGSDHELDSAWPQVDSSLTSIDEWKRKLTLLLRDKEKQELVTRERKDRRDFEQIAALASRMGLFSHLYAKVAVFSKVPLPNYRFDLDDKRPQREVTLPVGLLRRVDAHLREYLFQKSRFKESLSNTSFSRSSSSGSMATDEGLFEQPEQLPSSKAMTEKITSRRSLHLLDQQFSWQKSSEGRMMLEFRKSLPAYKAKDALLTAISQNQVVIISGETGCGKTTQVPQFILESEIESFCGAACSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGIKGRDTHLLFCTTGILLRRLLVDRSLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRKPELRLILMSATLDAELFSSYFGGAQTINIPGFTYPVRTHFLEDILETTGYSLTPFNQVDDYGQERNWKMSKQTPGKRKSQIASAVEDALKGANFLEYSRQTREYLSCWNPDCIGFNLIEYLLVNICENEKPGAVLVFMTGWDDISSLKDKLQAHPFLGDPRHVLLLACHGSMASSEQRLIFDAPTEGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECFHLYPRCVYDSFPEYQLPEILRTPLQSLCLQIKSLKLGSITEFLSRALQSPERLAVQNAIEYLKIIGALDENENLTVLGRYLTILPMEPKLGKMLVLGAIFNCLDPILTIVAGLSIRDPFLAPFDKKDLAEAAKYQFSQDHSDHLALVRAYEGYKDAERNYSGYDFCWKNFLSPQSMKAIDSLRKEFFSLLRDTGLVDGNPTITQNLDHNLVRAVICYGLYPGICSVVHNEKSFTLKTMEDGQVLLYSNSVNSRELRIPYPWLVFNEKIKVNSVFLRDSTAVCDSVLLLLGGSISKGDIDGELKMLGGYLEFFMKPAVADMYLSLRRKLEELIQKKLLNPQMDLHSYNELLSAVYLLISEDPCEGRFIYNRQILKTSSKTSSNPPQSSPLISRTESGPGGDNSKSQLQTLLTRAGCNAPSYKTKQLKNNQFLATVEFNGMQIMGQPCSNKKTAEKDAAAEAIQWLMGGAQAGHHYINNMSMLIKKSKRDHN 1175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6425135 6433317 - Conep19aG0082000.1 Cone19ag0798 459235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0798 1175 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 896 978 IPR011709 -
Cone19ag0798 1175 FunFam DExH-box ATP-dependent RNA helicase DExH3 235 460 - -
Cone19ag0798 1175 SMART DRBM_3 1087 1150 IPR014720 -
Cone19ag0798 1175 SUPERFAMILY dsRNA-binding domain-like 1082 1153 - -
Cone19ag0798 1175 SMART helicmild6 574 680 IPR001650 -
Cone19ag0798 1175 PANTHER ATP-DEPENDENT RNA HELICASE 230 1068 - GO:0003723(PANTHER)|GO:0004386(PANTHER)|GO:0005622(PANTHER)|GO:0005634(PANTHER)
Cone19ag0798 1175 Gene3D - 1073 1152 - -
Cone19ag0798 1175 FunFam Putative ATP-dependent RNA helicase DHX36 722 826 - -
Cone19ag0798 1175 SMART ultradead3 280 466 IPR014001 -
Cone19ag0798 1175 Gene3D - 722 827 - -
Cone19ag0798 1175 Pfam Double-stranded RNA binding motif 1088 1149 IPR014720 -
Cone19ag0798 1175 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 546 720 IPR001650 -
Cone19ag0798 1175 CDD DEXHc_RHA-like 298 458 - -
Cone19ag0798 1175 MobiDBLite consensus disorder prediction 216 242 - -
Cone19ag0798 1175 Pfam Helicase associated domain (HA2), ratchet-like 772 831 - -
Cone19ag0798 1175 Gene3D - 234 460 IPR027417 -
Cone19ag0798 1175 SMART ha2_5 742 832 IPR007502 -
Cone19ag0798 1175 FunFam DExH-box ATP-dependent RNA helicase DExH3 1065 1154 - -
Cone19ag0798 1175 FunFam DExH-box ATP-dependent RNA helicase DExH3 542 698 - -
Cone19ag0798 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 846 IPR027417 -
Cone19ag0798 1175 MobiDBLite consensus disorder prediction 216 231 - -
Cone19ag0798 1175 Pfam Helicase conserved C-terminal domain 551 679 IPR001650 -
Cone19ag0798 1175 Gene3D - 545 698 IPR027417 -
Cone19ag0798 1175 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 292 459 IPR014001 -
Cone19ag0798 1175 Pfam DEAD/DEAH box helicase 291 443 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone19ag0798 1175 Pfam Helicase associated domain (HA2), winged-helix 743 770 IPR048333 -
Cone19ag0798 1175 MobiDBLite consensus disorder prediction 1061 1089 - -
Cone19ag0798 1175 CDD SF2_C_RHA 537 688 - -
Cone19ag0798 1175 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1086 1151 IPR014720 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0798 K14442 - - mdm:103402643 1807.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0965 Cone-Chr15:7663837 Cone19ag0798 Cone-Chr19:6425135 1.21E-147 dispersed
Cone19ag0798 Cone-Chr19:6425135 Cone1ag1445 Cone-Chr1:56941463 0 dispersed
Cone19ag0321 Cone-Chr19:2529751 Cone19ag0798 Cone-Chr19:6425135 0 transposed
Cone13ag0794 Cone-Chr13:7370496 Cone19ag0798 Cone-Chr19:6425135 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70