Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0802 ATGGTCAGACGCAGCCATCTCTACCTTACACGCCTCGTTCAGGAGCACCAAGAGATGGTCAACCGTCACAGCCTGTGTCTCTCACATCTTCGCGAAGCCAATGAAGAGGCTGAAGCTCTTCGTCGCGAGAACATTCATCTATGGAGCTTTAACCGGGAGCTAAACGAGCATCTTAGCCAGTTGGTCCAACCGTCGGTCCAAAAACAGCCTGGATCCCCTGACTATCGGACGCCGTATGATATCGCCGATACTCTACGTGGTCTTCGTGGAGGGGCAAGAGGCGCGGCGAGCAATTCTTCTTGGGACGAAGTTTCAGATGATAGCTCGCCGTACGTGAAGGAGAGCGGAAGGGTCCAGAATGTTAAGGCAGAGAGATTCTCGCTGCCGAAAAGTATTTCCGTGAGGTCGAATGGCTACTTGAAGATGGTTCATGCTCAGGCTGCTTCTGGTCATGGTGGACAGGTTCGCAGTGCCACTTGCCCTAAAACCGAGCGGTCACTCAAGATGGCGAAAAAGGTGTACGTTTCGGGAGGGAAGAAAGAGGAGGAGCCATTTGAACTGGAGGTGTACAATCAAGGCATGTATAAGACCGAGCTCTGCAACAAATGGCAGGAAACTGGAGCTTGCTCGTATGGAGACCACTGTCAGTTTGCTCACGGCATTGAAGAACTCCGTCCGGTCATCCGTCATCCTTGCTATAAGACAGAGGTCTGCCGAATGGTCCTTGCCGGAGTAGTCTGCCCTTATGGTCACCGTTGTCACTTCCGACATGCACTCACTGAGCAGGAGAAGCTGGCCAAGCTTAAGAACAGCAACAACATCATGAAGATGGAGAGATAA 840 52.02 MVRRSHLYLTRLVQEHQEMVNRHSLCLSHLREANEEAEALRRENIHLWSFNRELNEHLSQLVQPSVQKQPGSPDYRTPYDIADTLRGLRGGARGAASNSSWDEVSDDSSPYVKESGRVQNVKAERFSLPKSISVRSNGYLKMVHAQAASGHGGQVRSATCPKTERSLKMAKKVYVSGGKKEEEPFELEVYNQGMYKTELCNKWQETGACSYGDHCQFAHGIEELRPVIRHPCYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKLAKLKNSNNIMKMER 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6446452 6447831 - Conep19aG0082500.1 Cone19ag0802 459239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0802 279 FunFam zinc finger CCCH domain-containing protein 15-like 188 227 - -
Cone19ag0802 279 PANTHER CCCH ZINC FINGER/TIS11-RELATED 55 264 IPR045877 GO:0003729(InterPro)
Cone19ag0802 279 SMART c3hfinal6 194 221 IPR000571 GO:0046872(InterPro)
Cone19ag0802 279 SMART c3hfinal6 232 259 IPR000571 GO:0046872(InterPro)
Cone19ag0802 279 MobiDBLite consensus disorder prediction 90 112 - -
Cone19ag0802 279 SUPERFAMILY CCCH zinc finger 191 226 IPR036855 GO:0046872(InterPro)
Cone19ag0802 279 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 195 220 IPR000571 GO:0046872(InterPro)
Cone19ag0802 279 Gene3D - 188 227 - -
Cone19ag0802 279 Gene3D - 228 264 - -
Cone19ag0802 279 ProSiteProfiles Zinc finger C3H1-type profile. 233 260 IPR000571 GO:0046872(InterPro)
Cone19ag0802 279 FunFam Zinc finger protein 36, C3H1 type-like 1 228 264 - -
Cone19ag0802 279 ProSiteProfiles Zinc finger C3H1-type profile. 194 222 IPR000571 GO:0046872(InterPro)
Cone19ag0802 279 SUPERFAMILY CCCH zinc finger 231 262 IPR036855 GO:0046872(InterPro)
Cone19ag0802 279 Pfam RNA-binding, Nab2-type zinc finger 246 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0802 K18753 - - csv:101203274 358.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0802 Cone-Chr19:6446452 Cone2ag0452 Cone-Chr2:2418866 3.53E-39 dispersed
Cone13ag0797 Cone-Chr13:7387829 Cone19ag0802 Cone-Chr19:6446452 2.38E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g371 . . . . Bpe13g01048 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0797 Cone19ag0802 . . . Csa05g02054 . . . . . . . . . Bma06g01092 . . Cmo15g00971 . Cma15g00931 . Car15g00875 Cpe13g00388 . Bhi12g00856 . . . Hepe02g2686 . Lcy10g1463 Cla01g00581 Cam01g0608 Cec01g0599 Cco01g0622 Clacu01g0600 Cmu01g0573 Cre09g1932 Lsi09g00631 Csa05g01229 Chy09g00883 Cme09g01416
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008528 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45329 PF04749 PLAC8 5.40E-20 No_clan Cone TF