Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0812 ATGTCTTCTTCGAGACCTAACCAGTCATCTACCAGTTCAAGGCAATCAAGGCACAGCTCTAGGATAATTGCTCAAACAACTGTCGATGCAAAGCTTCATGCGGATTTCGAGGAGTCAGGTACTTCTTTTGCAGATCAACAGCCCAGGTCCGGCAAAGTCACCTCAGCTTACCTTCACCACATACAGAAAGGCAAGCTCATCCAACCGTTTGGTTGCTTGCTAGCCTTAGATGAGAAAACTTTCAAGGTAATTGCTTACAGTGAGAATGCAAGTGATATGTTGACCATGGTCAGTCATTCCGTTCCAAGTGTAGGGGACCAGCCGGTTCTTGGCATTGGAACGGACATAAATACCATTTTCACCGCCCCTAGTGCATCAGCATTGCAGAAGGCACTCGGTTTTGGGGAGGTAACACTTTTGAACCCTATCTTAGTTCATTGTAAGACCTCGGGAAAACCATTCTATGCAATCGTGCATAGAGTTACTGGTAGTTTGATTATCGACTTTGAGCCAGTAAAGCCATTTGAAATTCCTATGACAGCAGTAGGGGCCTTGCAGTCGTACAAGCTTGCTGCCAAAGCAATTACAAAGTTGCAGTCTCTGCCTAGTGGGAACATGACAAGGCTTTGTGATACCATGGTCCAAGAGGTTTTTGAACTCACAGGGTATGATAGGGTAATGGCTTATAAATTTCATGATGATGATCATGGGGAGGTGGTTTCTGAGGTTGTGAAACCGGGTCAAGAGCCATATTTGGGATTGCACTATCCTGCTACCGATATCCCTCAGGCGGCTCGTTTCTTGTTCATGAAGAATAAAGTTCGCATGATTGTTGATTGCCGTGCAAAACACGTGCAGGTAGTACAAGATGGGAATCTCCAGCTTGATCTAACTTTGTGTGGTTCAACCCTAAGGGCCCCACATGGTTGTCATGTACTGTATATGGAGAATATGAATTCCATTGCTTCTCTGGTTATGGCCGTTGTGGTCAATGAAGGGGATGATGAGGGTGGAGATAGCTCTACTTCCGTGCAACCGCTGAAGAGGAAAAGACTTTGGGGTTTAGTCGTATGCCATAACACAACTCCAAGATTTGTTCCTTTCCCTCTTAGGTATGCTTGTGAGTTCCTAGCTCAAGTATTTGCCGTTCATGTGGGTAAAGAGATAGAGCTAGAAAATCAGATTGTAGAGAAAAACATCCTTCGTACACAGACACTCCTTTGTGACATGCTGATGCGAGATGCACCCTTGGGAATTGTGTCGCAAAAACCTAGTATAATGGATCTTGTCAAATGCAATGGGGCTGCACTTTTATACAAGAACAAGATATGGAAACTGGGGATTACTCCTAGTGATTTTCAGCTGCAAGATATTGCCTCATGGTTTGCTAAGTACCATATGGATTCAACTGGATTGAGTACAGATAGCTTGTTTGATGCGGGTTATCCAGGGGCTCTTGCACTTGGTGATGTAGTATGTGGAATGGCTGCTGTCAGGATAACTGCTAACGACATGATTTTCTGGTTCCGGTCCCACACTGCTACAGAAATCAAGTGGGGTGGTGCAAGGCATGAGCCTGGGAAAAGGGATAATGGAAATAAGATGCACCCAAGGTCGTCTTTCAAGGCGTTCCTTGAAGTAGTCAAGACACGGAGTTTACCTTGGAAGGACTCTGAAATGGATGCAATACATTCTTTGCAGCTTATTCTTAGGAATACATTCAAAGATGTGGATAAGGTTGATTCAAACGGCAAAGCTATTCATGCGAAGCTCAGTGACCTCCGAATTGAAGGGATGCAGGAGTTGGAAACAGTGACAAGTGAGATGGTTCGCTTGATTGAAACAGCATCGGTGCCTATTTTGGCAGTTGATGTAGATGGGGTAGTTAATGGGTGGAATATGAAAATTGCTGAGTTAACTGAACTTCCTGTCGATAAAGCAATTGGAAAGCATTTGCTCACACTTGTGGAAGATTCCTCAATAGACACGGTCAAGAAGATGTTATTCTTGGCACTGCAAGGTAAGGAGGAGCAAAACATCCAATTTGAGATCAAAACACATGGGTCTAGGGTTGACTTGGGTCCTATATCCTTAGTTGTGAATGCTTGTGCAAGCAGAGACTTGCAGGAAAACGTTGTGGGAGTATGCTTTGTGGCTCAAGATGTTACCAGTCAGAAGACTGTGATGGACAAGTTCACCCGGATCGAAGGTGATTACAGAGCTATTATACAGAATCCGAGTCCATTGATCCCCCCAATATTTGGCACTGATGAATTTGGCTGGTGCTCGGAGTGGAACCTAGCAATGACCAGATTAAGTGGATGGACCCGTGAACAAGTAATAGACAAAATGCTCTTGGGAGAGGTTTTTGGGATCAACAAGGCTTGTTGTCGTGTAAAGAGCCAAGAATCATTTGTAAATCTTGGCATTGTCCTTAACAATGCCGTTAGTGGTCAAAATCCTGACAAGGTTCCCTTTGGGTTCTTTGCGCGGAATGGGAGATATGTAGAATGTCTGCTCTCCGTGAGTAAGAAGGTGGACAGAGAGGGAGTAGTGACTGGGATTTTCTGCTTCTTACAGCTTGGTAGTCAAGAGCTGCAACAAGCACTTCATGTCCATAGGTTATCCAAGCAAACTGCTATGAAGAGATTGAAAGAATTAGTGTATATTAAAAGACAGTTACGGAATCCTCTATCCGGAATCATATTTTCTAAGAAAACCATGGAGAGTACTGAGTTGAACACTGAACAGAAGCAGCTTCTGCATACTAGTGCACAGTGCCAGCGCCAGCTTAGCAAGGTTCTTGATGACTCAGATCTTGATAAGATCATTGATGGGTTCTTGGATTTGGAAATGGTTCAGTTTACTTTGCATGAAGTGTTGATTGCTTCTATGAGTCAGGCCATGATGAAAAGCGAAGCGAAGGGCATCCAGATAGAAAACGAGACATCAGAGGAGACTATGACTGAAATGTTGTATGGTGATAGCATTAGGCTTCAACAAATCTTAGCCGACTTCTTAATTATATCCGTGAATTTTACACCCGTAGGAGGCCAGCTTGTCATTTCGGCCACTTTGACCAAAAACCAGCTCGGCGAATCTGTGCAGTTGGTGCACCTCGAGCTCCGGATAACACATGCAGGAGGAATACCAGAAGCCTTGCTAAACCAGATGTTTGAAAATAATGACGAAGCATCTGACGAGGGCATTAGTCTACTAATCAGCAGAAAACTAGTAAAGCTTATGAATGGAGATGTACAGTGTCTTAGAGAAGCCGGAAAGTCTACTTTCATCATATCCGTCGAGCTTGCTTCCGGTTTTAAGTTGCGGGACTGA 3336 44.12 MSSSRPNQSSTSSRQSRHSSRIIAQTTVDAKLHADFEESGTSFADQQPRSGKVTSAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENASDMLTMVSHSVPSVGDQPVLGIGTDINTIFTAPSASALQKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPFEIPMTAVGALQSYKLAAKAITKLQSLPSGNMTRLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEVVKPGQEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVQVVQDGNLQLDLTLCGSTLRAPHGCHVLYMENMNSIASLVMAVVVNEGDDEGGDSSTSVQPLKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAVHVGKEIELENQIVEKNILRTQTLLCDMLMRDAPLGIVSQKPSIMDLVKCNGAALLYKNKIWKLGITPSDFQLQDIASWFAKYHMDSTGLSTDSLFDAGYPGALALGDVVCGMAAVRITANDMIFWFRSHTATEIKWGGARHEPGKRDNGNKMHPRSSFKAFLEVVKTRSLPWKDSEMDAIHSLQLILRNTFKDVDKVDSNGKAIHAKLSDLRIEGMQELETVTSEMVRLIETASVPILAVDVDGVVNGWNMKIAELTELPVDKAIGKHLLTLVEDSSIDTVKKMLFLALQGKEEQNIQFEIKTHGSRVDLGPISLVVNACASRDLQENVVGVCFVAQDVTSQKTVMDKFTRIEGDYRAIIQNPSPLIPPIFGTDEFGWCSEWNLAMTRLSGWTREQVIDKMLLGEVFGINKACCRVKSQESFVNLGIVLNNAVSGQNPDKVPFGFFARNGRYVECLLSVSKKVDREGVVTGIFCFLQLGSQELQQALHVHRLSKQTAMKRLKELVYIKRQLRNPLSGIIFSKKTMESTELNTEQKQLLHTSAQCQRQLSKVLDDSDLDKIIDGFLDLEMVQFTLHEVLIASMSQAMMKSEAKGIQIENETSEETMTEMLYGDSIRLQQILADFLIISVNFTPVGGQLVISATLTKNQLGESVQLVHLELRITHAGGIPEALLNQMFENNDEASDEGISLLISRKLVKLMNGDVQCLREAGKSTFIISVELASGFKLRD 1111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6479343 6483940 + Conep19aG0083500.1 Cone19ag0812 459249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0812 1111 CDD PAS 616 722 IPR000014 -
Cone19ag0812 1111 ProSiteProfiles Histidine kinase domain profile. 889 1105 IPR005467 -
Cone19ag0812 1111 CDD PAS 749 860 IPR000014 -
Cone19ag0812 1111 Gene3D - 186 550 IPR029016 -
Cone19ag0812 1111 SMART HisKA_10 883 946 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone19ag0812 1111 SMART pas_2 607 673 IPR000014 -
Cone19ag0812 1111 SMART pas_2 737 806 IPR000014 -
Cone19ag0812 1111 SUPERFAMILY PYP-like sensor domain (PAS domain) 611 718 IPR035965 -
Cone19ag0812 1111 SMART gaf_1 205 399 IPR003018 GO:0005515(InterPro)
Cone19ag0812 1111 ProSiteProfiles PAS repeat profile. 735 790 IPR000014 -
Cone19ag0812 1111 Gene3D - 394 567 IPR043150 -
Cone19ag0812 1111 SUPERFAMILY GAF domain-like 397 575 - -
Cone19ag0812 1111 FunFam Phytochrome 394 524 - -
Cone19ag0812 1111 Pfam Phytochrome region 402 575 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone19ag0812 1111 SUPERFAMILY PYP-like sensor domain (PAS domain) 61 173 IPR035965 -
Cone19ag0812 1111 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 205 379 IPR016132 -
Cone19ag0812 1111 CDD HATPase_Phy-like 993 1103 IPR044767 -
Cone19ag0812 1111 PANTHER OS08G0260000 PROTEIN 1 694 - -
Cone19ag0812 1111 SUPERFAMILY GAF domain-like 185 385 - -
Cone19ag0812 1111 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 994 1103 IPR003594 -
Cone19ag0812 1111 SMART HKATPase_4 994 1105 IPR003594 -
Cone19ag0812 1111 Gene3D PAS domain 61 308 - -
Cone19ag0812 1111 PRINTS Phytochrome signature 608 624 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone19ag0812 1111 PRINTS Phytochrome signature 419 439 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone19ag0812 1111 PRINTS Phytochrome signature 537 555 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone19ag0812 1111 PRINTS Phytochrome signature 220 239 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone19ag0812 1111 PRINTS Phytochrome signature 305 326 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone19ag0812 1111 PRINTS Phytochrome signature 504 523 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone19ag0812 1111 PRINTS Phytochrome signature 120 142 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone19ag0812 1111 PRINTS Phytochrome signature 700 717 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone19ag0812 1111 PRINTS Phytochrome signature 720 740 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone19ag0812 1111 PRINTS Phytochrome signature 627 642 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone19ag0812 1111 Pfam GAF domain 206 389 IPR003018 GO:0005515(InterPro)
Cone19ag0812 1111 NCBIfam PAS domain S-box protein 612 728 IPR000014 -
Cone19ag0812 1111 Pfam PAS fold 56 172 IPR013654 GO:0006355(InterPro)
Cone19ag0812 1111 ProSiteProfiles PAS repeat profile. 605 675 IPR000014 -
Cone19ag0812 1111 ProSitePatterns Phytochrome chromophore attachment site signature. 305 314 IPR013516 -
Cone19ag0812 1111 Pfam PAS fold 738 860 IPR013767 GO:0006355(InterPro)
Cone19ag0812 1111 Pfam PAS fold 608 722 IPR013767 GO:0006355(InterPro)
Cone19ag0812 1111 Gene3D - 945 1105 IPR036890 -
Cone19ag0812 1111 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 939 1099 IPR036890 -
Cone19ag0812 1111 SUPERFAMILY PYP-like sensor domain (PAS domain) 752 858 IPR035965 -
Cone19ag0812 1111 CDD HisKA 881 937 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone19ag0812 1111 Gene3D PAS domain 599 735 - -
Cone19ag0812 1111 MobiDBLite consensus disorder prediction 1 23 - -
Cone19ag0812 1111 Pfam His Kinase A (phospho-acceptor) domain 889 943 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone19ag0812 1111 FunFam Phytochrome 601 732 - -
Cone19ag0812 1111 PIRSF Phytochrome_conventional 1 1109 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0812 K12120 - - vvi:100240824 1805.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0812 Cone-Chr19:6479343 Cone8ag1368 Cone-Chr8:10914209 0 dispersed
Cone13ag0806 Cone-Chr13:7423582 Cone19ag0812 Cone-Chr19:6479343 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag0858 . 19 1108 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1384.4
Cone12ag0821 . 1 1107 Histidine Kinase Gene Family AT2G17820 63.1 0.0e+00 1382.5
Cone6ag0342 . 23 1008 Histidine Kinase Gene Family AT2G01830 71.5 0.0e+00 1354.0
Cone9ag0376 . 23 1002 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1348.6
Cone12ag1329 . 264 1193 Histidine Kinase Gene Family AT2G01830 54.7 4.3e-282 968.4
Cone15ag0619 . 88 1043 Histidine Kinase Gene Family AT2G01830 54.4 2.8e-281 965.7
Cone14ag0613 . 88 1042 Histidine Kinase Gene Family AT2G01830 54.2 6.2e-281 964.5
Cone8ag1386 . 265 1191 Histidine Kinase Gene Family AT2G01830 54.3 9.8e-279 957.2
Cone4ag1716 . 1 1005 Histidine Kinase Gene Family AT5G10720 56.9 1.7e-290 996.1
Cone7ag1634 . 1 1007 Histidine Kinase Gene Family AT5G10720 56.1 1.4e-284 976.5
Cone13ag0806 . 1 1121 Histidine Kinase Gene Family AT1G09570 77.6 0.0e+00 1767.7
Cone19ag0812 . 1 1108 Histidine Kinase Gene Family AT1G09570 76.8 0.0e+00 1748.4
Cone12ag1314 . 21 1122 Histidine Kinase Gene Family AT1G09570 57.3 0.0e+00 1277.3
Cone8ag1368 . 35 1132 Histidine Kinase Gene Family AT1G09570 57.0 0.0e+00 1267.3
Cone14ag0717 . 31 1119 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1177.9
Cone15ag0729 . 31 951 Histidine Kinase Gene Family AT1G09570 56.0 1.7e-305 1046.2
Cone14ag0717 . 5 1060 Histidine Kinase Gene Family AT2G18790 79.1 0.0e+00 1662.5
Cone15ag0729 . 10 966 Histidine Kinase Gene Family AT2G18790 79.0 0.0e+00 1515.7
Cone8ag1368 . 45 1072 Histidine Kinase Gene Family AT2G18790 54.6 0.0e+00 1113.2
Cone12ag1314 . 33 1062 Histidine Kinase Gene Family AT2G18790 55.0 0.0e+00 1112.1
Cone13ag0806 . 20 1056 Histidine Kinase Gene Family AT2G18790 52.3 0.0e+00 1076.6
Cone19ag0812 . 20 1043 Histidine Kinase Gene Family AT2G18790 51.6 7.2e-312 1067.4
Cone12ag1314 . 19 1126 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1410.6
Cone8ag1368 . 29 1136 Histidine Kinase Gene Family AT5G35840 62.9 0.0e+00 1409.0
Cone14ag0717 . 13 1121 Histidine Kinase Gene Family AT5G35840 52.0 0.0e+00 1127.5
Cone13ag0806 . 7 1115 Histidine Kinase Gene Family AT5G35840 50.9 0.0e+00 1106.3
Cone19ag0812 . 7 1102 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1103.2
Cone15ag0729 . 13 951 Histidine Kinase Gene Family AT5G35840 54.3 2.7e-295 1012.3
Cone14ag0717 . 8 1121 Histidine Kinase Gene Family AT4G16250 76.0 0.0e+00 1692.6
Cone15ag0729 . 8 971 Histidine Kinase Gene Family AT4G16250 75.8 0.0e+00 1467.6
Cone12ag1314 . 33 1125 Histidine Kinase Gene Family AT4G16250 53.8 0.0e+00 1151.7
Cone8ag1368 . 45 1135 Histidine Kinase Gene Family AT4G16250 53.5 0.0e+00 1150.6
Cone13ag0806 . 19 1116 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1113.6
Cone19ag0812 . 19 1103 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1107.4
Cone14ag0717 . 12 1119 Histidine Kinase Gene Family AT4G18130 58.7 0.0e+00 1272.7
Cone15ag0729 . 12 949 Histidine Kinase Gene Family AT4G18130 60.8 0.0e+00 1108.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56