Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone19ag0812 | ATGTCTTCTTCGAGACCTAACCAGTCATCTACCAGTTCAAGGCAATCAAGGCACAGCTCTAGGATAATTGCTCAAACAACTGTCGATGCAAAGCTTCATGCGGATTTCGAGGAGTCAGGTACTTCTTTTGCAGATCAACAGCCCAGGTCCGGCAAAGTCACCTCAGCTTACCTTCACCACATACAGAAAGGCAAGCTCATCCAACCGTTTGGTTGCTTGCTAGCCTTAGATGAGAAAACTTTCAAGGTAATTGCTTACAGTGAGAATGCAAGTGATATGTTGACCATGGTCAGTCATTCCGTTCCAAGTGTAGGGGACCAGCCGGTTCTTGGCATTGGAACGGACATAAATACCATTTTCACCGCCCCTAGTGCATCAGCATTGCAGAAGGCACTCGGTTTTGGGGAGGTAACACTTTTGAACCCTATCTTAGTTCATTGTAAGACCTCGGGAAAACCATTCTATGCAATCGTGCATAGAGTTACTGGTAGTTTGATTATCGACTTTGAGCCAGTAAAGCCATTTGAAATTCCTATGACAGCAGTAGGGGCCTTGCAGTCGTACAAGCTTGCTGCCAAAGCAATTACAAAGTTGCAGTCTCTGCCTAGTGGGAACATGACAAGGCTTTGTGATACCATGGTCCAAGAGGTTTTTGAACTCACAGGGTATGATAGGGTAATGGCTTATAAATTTCATGATGATGATCATGGGGAGGTGGTTTCTGAGGTTGTGAAACCGGGTCAAGAGCCATATTTGGGATTGCACTATCCTGCTACCGATATCCCTCAGGCGGCTCGTTTCTTGTTCATGAAGAATAAAGTTCGCATGATTGTTGATTGCCGTGCAAAACACGTGCAGGTAGTACAAGATGGGAATCTCCAGCTTGATCTAACTTTGTGTGGTTCAACCCTAAGGGCCCCACATGGTTGTCATGTACTGTATATGGAGAATATGAATTCCATTGCTTCTCTGGTTATGGCCGTTGTGGTCAATGAAGGGGATGATGAGGGTGGAGATAGCTCTACTTCCGTGCAACCGCTGAAGAGGAAAAGACTTTGGGGTTTAGTCGTATGCCATAACACAACTCCAAGATTTGTTCCTTTCCCTCTTAGGTATGCTTGTGAGTTCCTAGCTCAAGTATTTGCCGTTCATGTGGGTAAAGAGATAGAGCTAGAAAATCAGATTGTAGAGAAAAACATCCTTCGTACACAGACACTCCTTTGTGACATGCTGATGCGAGATGCACCCTTGGGAATTGTGTCGCAAAAACCTAGTATAATGGATCTTGTCAAATGCAATGGGGCTGCACTTTTATACAAGAACAAGATATGGAAACTGGGGATTACTCCTAGTGATTTTCAGCTGCAAGATATTGCCTCATGGTTTGCTAAGTACCATATGGATTCAACTGGATTGAGTACAGATAGCTTGTTTGATGCGGGTTATCCAGGGGCTCTTGCACTTGGTGATGTAGTATGTGGAATGGCTGCTGTCAGGATAACTGCTAACGACATGATTTTCTGGTTCCGGTCCCACACTGCTACAGAAATCAAGTGGGGTGGTGCAAGGCATGAGCCTGGGAAAAGGGATAATGGAAATAAGATGCACCCAAGGTCGTCTTTCAAGGCGTTCCTTGAAGTAGTCAAGACACGGAGTTTACCTTGGAAGGACTCTGAAATGGATGCAATACATTCTTTGCAGCTTATTCTTAGGAATACATTCAAAGATGTGGATAAGGTTGATTCAAACGGCAAAGCTATTCATGCGAAGCTCAGTGACCTCCGAATTGAAGGGATGCAGGAGTTGGAAACAGTGACAAGTGAGATGGTTCGCTTGATTGAAACAGCATCGGTGCCTATTTTGGCAGTTGATGTAGATGGGGTAGTTAATGGGTGGAATATGAAAATTGCTGAGTTAACTGAACTTCCTGTCGATAAAGCAATTGGAAAGCATTTGCTCACACTTGTGGAAGATTCCTCAATAGACACGGTCAAGAAGATGTTATTCTTGGCACTGCAAGGTAAGGAGGAGCAAAACATCCAATTTGAGATCAAAACACATGGGTCTAGGGTTGACTTGGGTCCTATATCCTTAGTTGTGAATGCTTGTGCAAGCAGAGACTTGCAGGAAAACGTTGTGGGAGTATGCTTTGTGGCTCAAGATGTTACCAGTCAGAAGACTGTGATGGACAAGTTCACCCGGATCGAAGGTGATTACAGAGCTATTATACAGAATCCGAGTCCATTGATCCCCCCAATATTTGGCACTGATGAATTTGGCTGGTGCTCGGAGTGGAACCTAGCAATGACCAGATTAAGTGGATGGACCCGTGAACAAGTAATAGACAAAATGCTCTTGGGAGAGGTTTTTGGGATCAACAAGGCTTGTTGTCGTGTAAAGAGCCAAGAATCATTTGTAAATCTTGGCATTGTCCTTAACAATGCCGTTAGTGGTCAAAATCCTGACAAGGTTCCCTTTGGGTTCTTTGCGCGGAATGGGAGATATGTAGAATGTCTGCTCTCCGTGAGTAAGAAGGTGGACAGAGAGGGAGTAGTGACTGGGATTTTCTGCTTCTTACAGCTTGGTAGTCAAGAGCTGCAACAAGCACTTCATGTCCATAGGTTATCCAAGCAAACTGCTATGAAGAGATTGAAAGAATTAGTGTATATTAAAAGACAGTTACGGAATCCTCTATCCGGAATCATATTTTCTAAGAAAACCATGGAGAGTACTGAGTTGAACACTGAACAGAAGCAGCTTCTGCATACTAGTGCACAGTGCCAGCGCCAGCTTAGCAAGGTTCTTGATGACTCAGATCTTGATAAGATCATTGATGGGTTCTTGGATTTGGAAATGGTTCAGTTTACTTTGCATGAAGTGTTGATTGCTTCTATGAGTCAGGCCATGATGAAAAGCGAAGCGAAGGGCATCCAGATAGAAAACGAGACATCAGAGGAGACTATGACTGAAATGTTGTATGGTGATAGCATTAGGCTTCAACAAATCTTAGCCGACTTCTTAATTATATCCGTGAATTTTACACCCGTAGGAGGCCAGCTTGTCATTTCGGCCACTTTGACCAAAAACCAGCTCGGCGAATCTGTGCAGTTGGTGCACCTCGAGCTCCGGATAACACATGCAGGAGGAATACCAGAAGCCTTGCTAAACCAGATGTTTGAAAATAATGACGAAGCATCTGACGAGGGCATTAGTCTACTAATCAGCAGAAAACTAGTAAAGCTTATGAATGGAGATGTACAGTGTCTTAGAGAAGCCGGAAAGTCTACTTTCATCATATCCGTCGAGCTTGCTTCCGGTTTTAAGTTGCGGGACTGA | 3336 | 44.12 | MSSSRPNQSSTSSRQSRHSSRIIAQTTVDAKLHADFEESGTSFADQQPRSGKVTSAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENASDMLTMVSHSVPSVGDQPVLGIGTDINTIFTAPSASALQKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPFEIPMTAVGALQSYKLAAKAITKLQSLPSGNMTRLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEVVKPGQEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVQVVQDGNLQLDLTLCGSTLRAPHGCHVLYMENMNSIASLVMAVVVNEGDDEGGDSSTSVQPLKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAVHVGKEIELENQIVEKNILRTQTLLCDMLMRDAPLGIVSQKPSIMDLVKCNGAALLYKNKIWKLGITPSDFQLQDIASWFAKYHMDSTGLSTDSLFDAGYPGALALGDVVCGMAAVRITANDMIFWFRSHTATEIKWGGARHEPGKRDNGNKMHPRSSFKAFLEVVKTRSLPWKDSEMDAIHSLQLILRNTFKDVDKVDSNGKAIHAKLSDLRIEGMQELETVTSEMVRLIETASVPILAVDVDGVVNGWNMKIAELTELPVDKAIGKHLLTLVEDSSIDTVKKMLFLALQGKEEQNIQFEIKTHGSRVDLGPISLVVNACASRDLQENVVGVCFVAQDVTSQKTVMDKFTRIEGDYRAIIQNPSPLIPPIFGTDEFGWCSEWNLAMTRLSGWTREQVIDKMLLGEVFGINKACCRVKSQESFVNLGIVLNNAVSGQNPDKVPFGFFARNGRYVECLLSVSKKVDREGVVTGIFCFLQLGSQELQQALHVHRLSKQTAMKRLKELVYIKRQLRNPLSGIIFSKKTMESTELNTEQKQLLHTSAQCQRQLSKVLDDSDLDKIIDGFLDLEMVQFTLHEVLIASMSQAMMKSEAKGIQIENETSEETMTEMLYGDSIRLQQILADFLIISVNFTPVGGQLVISATLTKNQLGESVQLVHLELRITHAGGIPEALLNQMFENNDEASDEGISLLISRKLVKLMNGDVQCLREAGKSTFIISVELASGFKLRD | 1111 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 6479343 | 6483940 | + | Conep19aG0083500.1 | Cone19ag0812 | 459249 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone19ag0812 | 1111 | CDD | PAS | 616 | 722 | IPR000014 | - | |
| Cone19ag0812 | 1111 | ProSiteProfiles | Histidine kinase domain profile. | 889 | 1105 | IPR005467 | - | |
| Cone19ag0812 | 1111 | CDD | PAS | 749 | 860 | IPR000014 | - | |
| Cone19ag0812 | 1111 | Gene3D | - | 186 | 550 | IPR029016 | - | |
| Cone19ag0812 | 1111 | SMART | HisKA_10 | 883 | 946 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Cone19ag0812 | 1111 | SMART | pas_2 | 607 | 673 | IPR000014 | - | |
| Cone19ag0812 | 1111 | SMART | pas_2 | 737 | 806 | IPR000014 | - | |
| Cone19ag0812 | 1111 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 611 | 718 | IPR035965 | - | |
| Cone19ag0812 | 1111 | SMART | gaf_1 | 205 | 399 | IPR003018 | GO:0005515(InterPro) | |
| Cone19ag0812 | 1111 | ProSiteProfiles | PAS repeat profile. | 735 | 790 | IPR000014 | - | |
| Cone19ag0812 | 1111 | Gene3D | - | 394 | 567 | IPR043150 | - | |
| Cone19ag0812 | 1111 | SUPERFAMILY | GAF domain-like | 397 | 575 | - | - | |
| Cone19ag0812 | 1111 | FunFam | Phytochrome | 394 | 524 | - | - | |
| Cone19ag0812 | 1111 | Pfam | Phytochrome region | 402 | 575 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone19ag0812 | 1111 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 61 | 173 | IPR035965 | - | |
| Cone19ag0812 | 1111 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 205 | 379 | IPR016132 | - | |
| Cone19ag0812 | 1111 | CDD | HATPase_Phy-like | 993 | 1103 | IPR044767 | - | |
| Cone19ag0812 | 1111 | PANTHER | OS08G0260000 PROTEIN | 1 | 694 | - | - | |
| Cone19ag0812 | 1111 | SUPERFAMILY | GAF domain-like | 185 | 385 | - | - | |
| Cone19ag0812 | 1111 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 994 | 1103 | IPR003594 | - | |
| Cone19ag0812 | 1111 | SMART | HKATPase_4 | 994 | 1105 | IPR003594 | - | |
| Cone19ag0812 | 1111 | Gene3D | PAS domain | 61 | 308 | - | - | |
| Cone19ag0812 | 1111 | PRINTS | Phytochrome signature | 608 | 624 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone19ag0812 | 1111 | PRINTS | Phytochrome signature | 419 | 439 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone19ag0812 | 1111 | PRINTS | Phytochrome signature | 537 | 555 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone19ag0812 | 1111 | PRINTS | Phytochrome signature | 220 | 239 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone19ag0812 | 1111 | PRINTS | Phytochrome signature | 305 | 326 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone19ag0812 | 1111 | PRINTS | Phytochrome signature | 504 | 523 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone19ag0812 | 1111 | PRINTS | Phytochrome signature | 120 | 142 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone19ag0812 | 1111 | PRINTS | Phytochrome signature | 700 | 717 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone19ag0812 | 1111 | PRINTS | Phytochrome signature | 720 | 740 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone19ag0812 | 1111 | PRINTS | Phytochrome signature | 627 | 642 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cone19ag0812 | 1111 | Pfam | GAF domain | 206 | 389 | IPR003018 | GO:0005515(InterPro) | |
| Cone19ag0812 | 1111 | NCBIfam | PAS domain S-box protein | 612 | 728 | IPR000014 | - | |
| Cone19ag0812 | 1111 | Pfam | PAS fold | 56 | 172 | IPR013654 | GO:0006355(InterPro) | |
| Cone19ag0812 | 1111 | ProSiteProfiles | PAS repeat profile. | 605 | 675 | IPR000014 | - | |
| Cone19ag0812 | 1111 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 305 | 314 | IPR013516 | - | |
| Cone19ag0812 | 1111 | Pfam | PAS fold | 738 | 860 | IPR013767 | GO:0006355(InterPro) | |
| Cone19ag0812 | 1111 | Pfam | PAS fold | 608 | 722 | IPR013767 | GO:0006355(InterPro) | |
| Cone19ag0812 | 1111 | Gene3D | - | 945 | 1105 | IPR036890 | - | |
| Cone19ag0812 | 1111 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 939 | 1099 | IPR036890 | - | |
| Cone19ag0812 | 1111 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 752 | 858 | IPR035965 | - | |
| Cone19ag0812 | 1111 | CDD | HisKA | 881 | 937 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Cone19ag0812 | 1111 | Gene3D | PAS domain | 599 | 735 | - | - | |
| Cone19ag0812 | 1111 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Cone19ag0812 | 1111 | Pfam | His Kinase A (phospho-acceptor) domain | 889 | 943 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Cone19ag0812 | 1111 | FunFam | Phytochrome | 601 | 732 | - | - | |
| Cone19ag0812 | 1111 | PIRSF | Phytochrome_conventional | 1 | 1109 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone19ag0812 | Cone-Chr19:6479343 | Cone8ag1368 | Cone-Chr8:10914209 | 0 | dispersed | |
| Cone13ag0806 | Cone-Chr13:7423582 | Cone19ag0812 | Cone-Chr19:6479343 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone19ag0812 | K12120 | - | vvi:100240824 | 1805.42 |