Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0819 ATGAAGGATCAAAGCCAAAACCCAATAGTTTCGATGTCGAGACTCCTCAGTGCTCAGCTACACCTAATTCATCTTCTCTCCTACTTCCTCCTCTTTGCTTGTGGAATCACAATCGGAGTGATACTTAGCTTCTACCTCACAAACCTCTCATTTAGTCTTCGATCTTCACCACCATCAATAATATCGACATCAAATAGTAGTACAAGTCGTGTCGGGTTGAACGAGTATATGAAGGTGCCCAGTGTTGTAATGCATGGTATGGAAGATGAAGAATTGCTTTGGAGAGCTTCAATGGCTCCAAGAATTAGTACATATCCATTTCAACGTGTGCCTAAAGTTGCATTCATGTTCTTGACTAAAGGGCCGGTCTATTTTGCTCCTCTTTGGGAAAAATTCTTCAAAGGGCACCAAGGATTGTACTCTATTTATGTTCATTCTAATCCTTGTTATAATCTTTCCCACCCTGAAAGCCCTGTTTTTAATGAAAGAAGAATCCCAAGCAAGGCAGTTCAATGGGGAAAAGTGAACATGATTGAAGCAGAAAGACGTTTACTAGCAAACGCGCTTCTTGACATATCAAATCAACGTTTCGTACTTCTTTCAGAATCTTGCATTCCACTCTTTAACTTCTCCACCATTTACTCCTACCTCATTAACTCCCCGAAAAACTTTGTCCATCTTTTCGACGATCCTAGTCCTGTAGGCCGTGGCCGTTACAGGCGCCACATGTACCCTAAAATCAAAATCAACCAATGGCGGAAAGGCTCTCAGTGGTTCGAAATGGACCGCGGCTTAGCCCTAGACGTTGTTTCAGACCAAGTATATTTCCCAATATTTCAGGAGTATGGCAACGGCTCATGTTATGCGGATGAACATTATTTGCCTACTTTCGTGAACATCAAGTCCCTGGAGAGGAACTCTAATAGGAGTTTGACTTGGGTAGACTGGACGAGAGGTGGGCCCCACCCATATAGTTTCGGAAGGCAAGCAGCTACCATGGAGGTCCTAAACAAGTTGAGAAAATGGAAGAAATGTGTGCATAATTATAATGGGGGAAATAGTAGTAGTAATAGTAGTAGTAGTATTGGTGCAAATGGTATCTGTTTCTTGTTTGCTAGAAAGTTTGCTCCTTCTTCCTTGGATAGGTTGCTTAAGTTTGCACCAAAAGTCATGAAATTCTGA 1182 41.96 MKDQSQNPIVSMSRLLSAQLHLIHLLSYFLLFACGITIGVILSFYLTNLSFSLRSSPPSIISTSNSSTSRVGLNEYMKVPSVVMHGMEDEELLWRASMAPRISTYPFQRVPKVAFMFLTKGPVYFAPLWEKFFKGHQGLYSIYVHSNPCYNLSHPESPVFNERRIPSKAVQWGKVNMIEAERRLLANALLDISNQRFVLLSESCIPLFNFSTIYSYLINSPKNFVHLFDDPSPVGRGRYRRHMYPKIKINQWRKGSQWFEMDRGLALDVVSDQVYFPIFQEYGNGSCYADEHYLPTFVNIKSLERNSNRSLTWVDWTRGGPHPYSFGRQAATMEVLNKLRKWKKCVHNYNGGNSSSNSSSSIGANGICFLFARKFAPSSLDRLLKFAPKVMKF 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6514639 6516402 - Conep19aG0084200.1 Cone19ag0819 459256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0819 393 Pfam Core-2/I-Branching enzyme 113 340 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
Cone19ag0819 393 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Cone19ag0819 393 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 40 389 IPR044174 GO:0016757(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0819 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0347 Cone-Chr19:2846892 Cone19ag0819 Cone-Chr19:6514639 4.33E-144 dispersed
Cone19ag0819 Cone-Chr19:6514639 Cone4ag1647 Cone-Chr4:12422371 1.94E-128 dispersed
Cone11ag0309 Cone-Chr11:1506430 Cone19ag0819 Cone-Chr19:6514639 3.57E-107 wgd
Cone13ag0813 Cone-Chr13:7461035 Cone19ag0819 Cone-Chr19:6514639 1.60E-89 wgd
Cone18ag1186 Cone-Chr18:8488988 Cone19ag0819 Cone-Chr19:6514639 1.18E-107 wgd
Cone19ag0819 Cone-Chr19:6514639 Cone6ag0431 Cone-Chr6:2091928 3.12E-73 wgd
Cone19ag0819 Cone-Chr19:6514639 Cone9ag0449 Cone-Chr9:2087084 2.47E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g338 Blo01g00507 . Bda01g02064 Bda11g00105 Bpe13g01106 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0819 Cone6ag0432 . . . . . . . . Bda11g00105 . Bpe02g02071 Bma01g00390 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002751 1 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 2 2 2 3 57