Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0826 ATGCCGGGGAAGGGCGACAGTTCCGATAAGGAGAAGTCGTTAGAGCTCTTCCAGAAGATCGGATTGGATGAGCGAACTGCGCGTAACACCATCGCCAACAACAAGGTCACTGCGAATCTAAACGCTGTCATTCAAGAGGCTAATGTCGGAGAGGGGTGCCATCGGACTGTTGGTAATCTACTGTATACGGTTGCTACAAAGTACCCTTCAAATGCCCTTGTCCATCGACCAATGTTACTGCAATATACAGTCTCGTCCAAGATTAAATCCACTGCACAGTTAGACGCAGCATTTGCATTTCTAACTGCTACAGCATCAGAGACTTTTAATGTGGCCAAATTTGAAGAAATATGTGGTGTTGGTGTTGAAGTTACTGAAGAAGAAATTGAACACGCTGTCAATAAAGTTTTCGAAGATAATAAGACTACAATAGTGGAGCAACGCTATCGAACAAATGTGGGTGATTTGTTTGGGCAGATTCGAAAGATACTACCATGGGCTGATCCAAAAATTGTCAAGCAACATGTTGATGCAAAACTGAAAGAGTTACTTGGTGAAAGGACTGCAGCAGATGATGAAAAAGTTGCAAAAAAGAAGAAAGAGAAGCCTGCTAAAGTGGAGGATAAAGCTGTTGTTGCTGCTACAGTTGAACAGCCATCTGAAGAAGAGTTAAATCCATATCTGATATTCCCTCAGCCAGAGGAAAATTATAAGGTGCATACAGAGGTATTCTTCAGCAATGGCTCTATTCTAAGATGTTACAACGCCAAGGAGCTTCTAGAAAAACACCTAAAAGCAACGGGTGGAAAAGTATTAACCCGCTTTCCTCCTGAACCAAATGGCTATCTCCATATTGGTCACGCTAAGGCAATGTTTGTTGATTTTGGCCTGGCAAAAGAGAGAGGTGGAGGCTGCTATCTGAGGTATGATGATACGAACCCAGAGGCTGAAAAAAAAGAATACATTGATCATATTGAAGAAATTGTGAAGTGGATGGGCTGGGAGCCTTTCAAGATCACTTACACCAGTGATTACTTCCAAGATCTGTACGAATTAGCAGTGGAGCTCATTCGACGGGGTCATGCGTATGTAGACCACCAGACTGCGGAAGAAATAAAAGAGTATAGGGAGAAAAAGATGAATAGTCCTTGGAGAGAAAGGCCGATTGCAGAGTCATTAAAATTGTTTGAGGAAATGAAACAAGGTCTGATTGAAGAAGGCAAAGCAACTCTGAGAATGAAGCAAGACATGCAGAGTGATAACTTTAATATGTATGACCTTATTGCTTATCGTATCAAGTTCACACCTCATCCCCATGCTGGAGACAAATGGTGCATCTATCCTAGTTATGATTACGCTCACTGTATTGTGGATTCCCTTGAGAATATCACACACTCGCTATGTACTCTAGAATTTGAAACACGCCGTGCTTCATACTATTGGTTATTACATGCACTAGGACTGTACCAGCCACATGTGTGGGAGTACTCACGGCTCAATGTTACAAACACTGTGATGTCCAAGCGTAAGCTAAACCGATTAGTGACAGAAAAGTGGGTGGATGGTTGGGATGACCCTCGCTTAATGACACTGGCTGGTTTAAGACGTAGGGGTGTTACATCAACAGCGATCAATGCTTTTGTTAGAGGAATTGGAATCACTAGAAGTGATTGTAGCATGATTCGTTTGGATCGCCTCGAGTATCACATAAGGGAAGAACTAAACCTAACAGCATCGCGTGCTATGGTTGTGTTGGATCCACTCAAAGTTGTCATCACCAACTTAGAGGATGGCTCATTAACAGACCTTGATGCAAAGAGGTGGCCCAATGCAGAAGCAGATAGTCCATCATCCTTTTACAAGGTTCCCTTTTCAAATGTTGTATACATTGAACGTTCTGATTTTCGCATGAAAGATTCAAAAGACTACCATGGGCTTGCTCCTGGAAAATCTGTTCTCCTGAGGTATGCATATCCCATCAAATGCACAGACGTTATCTTGGCAGGCGACAAGGAAACTGTACTTGAAATCCGTGCAGAGTATGATCCCTCAAAGAAGACAAAGCCAAAGGGGGTCCTTCATTGGGTTGGCCAACCTTCTCCAGGGACTGATCCCCTTAAGGTGGAAGTAAGACTGTTCGACAAGCTTTTCAATTCTGAGAATCCTGCTGAACTGGATGATTGGCTTGCTGATTTAAACCCACAGTCTAAAGTCGTCGTACCTTGTGCATATGCCGTACCCCCACTTCGGAGCGCTACTGTTGGAGACACATTCCAATTTGAAAGGCTTGGCTATTTTGCAGTTGATAAGGATTCCACTCCTGAAAAGCTTGTGTTTAATCGGACAGTCACACTGCGAGATAGCTACAACAAGAACGAGAAGTAG 2385 43.19 MPGKGDSSDKEKSLELFQKIGLDERTARNTIANNKVTANLNAVIQEANVGEGCHRTVGNLLYTVATKYPSNALVHRPMLLQYTVSSKIKSTAQLDAAFAFLTATASETFNVAKFEEICGVGVEVTEEEIEHAVNKVFEDNKTTIVEQRYRTNVGDLFGQIRKILPWADPKIVKQHVDAKLKELLGERTAADDEKVAKKKKEKPAKVEDKAVVAATVEQPSEEELNPYLIFPQPEENYKVHTEVFFSNGSILRCYNAKELLEKHLKATGGKVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGGCYLRYDDTNPEAEKKEYIDHIEEIVKWMGWEPFKITYTSDYFQDLYELAVELIRRGHAYVDHQTAEEIKEYREKKMNSPWRERPIAESLKLFEEMKQGLIEEGKATLRMKQDMQSDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLHALGLYQPHVWEYSRLNVTNTVMSKRKLNRLVTEKWVDGWDDPRLMTLAGLRRRGVTSTAINAFVRGIGITRSDCSMIRLDRLEYHIREELNLTASRAMVVLDPLKVVITNLEDGSLTDLDAKRWPNAEADSPSSFYKVPFSNVVYIERSDFRMKDSKDYHGLAPGKSVLLRYAYPIKCTDVILAGDKETVLEIRAEYDPSKKTKPKGVLHWVGQPSPGTDPLKVEVRLFDKLFNSENPAELDDWLADLNPQSKVVVPCAYAVPPLRSATVGDTFQFERLGYFAVDKDSTPEKLVFNRTVTLRDSYNKNEK 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6546525 6552376 + Conep19aG0084900.1 Cone19ag0826 459263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0826 794 PANTHER GLUTAMINE-TRNA LIGASE 19 785 IPR050132 GO:0004819(PANTHER)|GO:0005829(PANTHER)|GO:0006425(PANTHER)
Cone19ag0826 794 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 172 249 IPR007638 GO:0000166(InterPro)|GO:0004819(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006425(InterPro)
Cone19ag0826 794 SUPERFAMILY Nucleotidylyl transferase 270 584 - -
Cone19ag0826 794 PRINTS Glutamyl-tRNA synthetase signature 303 316 IPR000924 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Cone19ag0826 794 PRINTS Glutamyl-tRNA synthetase signature 274 286 IPR000924 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Cone19ag0826 794 PRINTS Glutamyl-tRNA synthetase signature 448 458 IPR000924 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Cone19ag0826 794 FunFam Glutamine--tRNA ligase cytoplasmic 702 787 - -
Cone19ag0826 794 Gene3D - 123 192 IPR042559 -
Cone19ag0826 794 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 12 169 IPR007639 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006418(InterPro)
Cone19ag0826 794 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 692 769 IPR049437 -
Cone19ag0826 794 Gene3D Ribosomal Protein L25; Chain P 702 787 IPR020056 -
Cone19ag0826 794 FunFam Glutamine--tRNA ligase cytoplasmic 124 192 - -
Cone19ag0826 794 Gene3D - 7 122 IPR042558 -
Cone19ag0826 794 Pfam tRNA synthetases class I (E and Q), catalytic domain 270 575 IPR020058 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Cone19ag0826 794 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 277 288 IPR001412 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cone19ag0826 794 FunFam Glutamine--tRNA ligase cytoplasmic 9 122 - -
Cone19ag0826 794 FunFam Glutamine--tRNA ligase 582 701 - -
Cone19ag0826 794 Gene3D Ribosomal Protein L25; Chain P 582 701 IPR020056 -
Cone19ag0826 794 Gene3D HUPs 242 581 IPR014729 -
Cone19ag0826 794 FunFam Glutamine--tRNA ligase cytoplasmic 240 581 - -
Cone19ag0826 794 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 578 682 IPR020059 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006418(InterPro)
Cone19ag0826 794 SUPERFAMILY Ribosomal protein L25-like 578 788 IPR011035 GO:0006412(InterPro)
Cone19ag0826 794 NCBIfam glutamine--tRNA ligase 271 791 IPR004514 GO:0000166(InterPro)|GO:0004819(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006425(InterPro)
Cone19ag0826 794 CDD GlnRS_core 270 580 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0826 K01886 - - csv:101210547 1323.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1474 Cone-Chr5:9818645 Cone19ag0826 Cone-Chr19:6546525 6.82E-67 transposed
Cone13ag0820 Cone-Chr13:7495351 Cone19ag0826 Cone-Chr19:6546525 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g328 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0820 Cone19ag0826 . . . . . . . . . . . . . . . . Cmo15g00955 . Cma15g00916 . Car15g00859 Cpe13g00403 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002630 2 4 2 3 2 2 1 2 2 2 2 2 1 2 2 1 2 2 1 2 2 1 1 2 2 2 3 2 2 2 58