Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0829 ATGGCAGAAGAGGAGGTTGTTCAAAATGGAGACTATCATGATCATGAGAAGAAGACGAAGAAGGAGAAGAAGATAATGGTAGCCATAGATGAAAGCGATAACAGCTACAACGCTCTGATGTGGGTCCTCGACAATCTGAAAGAGACCATAACCAGATTGGGTCTTGTGATTTTCATGGCCCAGACTCCTACTCAGAGCAACTACACTTTCGCTGCTTCTCTGGGCTCTGCTCGCATCTACTCCCCTCTTTCTTCCACTCCTGAATTTGTCAACTCTGTGAAAAAGAATAAGAAGAAGTTGGTTTTGGCCCTTCTTGAGAAGGCTAAGGATATCTGTGCTAGCCGAGGGGTGAGTGTGGTGACTGGGACAGAGGAAGGAGATCCAGGAACTGCAATTTGCGATGCGGTTAGAAACTACGACGTTTCTTTGCTTGTTGTAGGTGAACGTGGTGTTGGCCAAATCAAAAGGGCTATTTTAGGGAGCGTGAGCAACTATTGTGTGAATAACGCCAGCTGTCCTGTTCTTGTTGTGAAGAAACCATAG 543 45.86 MAEEEVVQNGDYHDHEKKTKKEKKIMVAIDESDNSYNALMWVLDNLKETITRLGLVIFMAQTPTQSNYTFAASLGSARIYSPLSSTPEFVNSVKKNKKKLVLALLEKAKDICASRGVSVVTGTEEGDPGTAICDAVRNYDVSLLVVGERGVGQIKRAILGSVSNYCVNNASCPVLVVKKP 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6562336 6563348 + Conep19aG0085200.1 Cone19ag0829 459266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0829 180 Pfam Universal stress protein family 23 178 IPR006016 -
Cone19ag0829 180 CDD USP_Like 25 177 - -
Cone19ag0829 180 PRINTS Universal stress protein signature 156 178 IPR006015 -
Cone19ag0829 180 PRINTS Universal stress protein signature 138 150 IPR006015 -
Cone19ag0829 180 PRINTS Universal stress protein signature 22 40 IPR006015 -
Cone19ag0829 180 Gene3D HUPs 16 180 IPR014729 -
Cone19ag0829 180 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 20 180 - -
Cone19ag0829 180 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0829 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0829 Cone-Chr19:6562336 Cone6ag0451 Cone-Chr6:2215649 3.07E-55 dispersed
Cone13ag0822 Cone-Chr13:7506960 Cone19ag0829 Cone-Chr19:6562336 2.92E-100 wgd
Cone19ag0829 Cone-Chr19:6562336 Cone6ag0438 Cone-Chr6:2137505 1.59E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g321 . . . . . . . . . . . . . . . Cpe09g00310 . Bhi07g01313 . . . . . . . . . . . . . . Cone19ag0829 . . . . . Cme10g00247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007321 0 6 0 0 0 1 1 1 1 2 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 0 1 1 0 3 36