Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0843 ATGAAGATTTTCGTGAAGACTCTTAAAGGCACTCACTTCGAGGTTGAAGTTCAGCCTGAAGATACGGTTGCTGATGTGAAGAAAAATATAGAATCTGTTCACGATGCTGATGTTTATCCTGCTACCCAGCAGATGCTTATCCATCAAGGGAAAGTCCTTAAAGATACCACAACTTTGAAAGAAAACAGTGTTGCAGAAAATAGTTTTGTTGTCATCATGTTAACAAAGAGTAAGTGTTCATCTGGTGAGGCTTCAACTGCACAAGCTGCACCTGTGACTAAGGCTCAAGCTCCCAGTGCCCCTCCTGCTCTCACCCCAGCTTCAACAGTATCACAGGCTCCCATAACTTCTGCCCCGCCTGCTCCCTCTCCTCCTATCCCTGCCCCTATTCCTGCTGCTGCTGCCACTTCTTCGCCTACTGCAGCGTCGGAGCCTGATGTATACGGCCAAGTTGCTTCTAATCTGGTTGCTGGTAGAAACCTTGACCAGACCATCCAGCAGATTCTTGATATGGGTGGAGGAACTTGGGATAGAGAAACGGTCATTCGTGCTCTTCGTGCTGCTTTTAACAATCCGGAGAGAGCTGTTGAATATCTTTATTCTGGTATCCCTGAGCAAGCTGAAGTTCCACCTGTTGCTCGAGTTTCTGCTTCTGCAGGAGGTGCAGCCCCTCCAGCCCAGCCTCCACAGTCAACCCAACCTGTACCTGTTCCATCAAGTGGCCCAAATGCTAATCCTCTGGACCTCTTCCCCCAGGGAATTCCAGATTCAGGCACTGGGGCTGCTGGAGCAGGAACTCTTGATTTCCTTCGCCAGAGTCAGCAGTTTCAAGCCTTACGAAGCATGGTGCAGGCAAATCCACAGATATTGCAGCCCATGCTCCAAGAGCTAGGAAAACAAAATCCTCACCTTATGAGGCTAATTCAAGAGCACCAGGCTGACTTTCTTCGCCTCATCAATGAACCTGTCGAAGGAGGAGAGGGGAACATTCTAGGGCAACTTGCTGCGGGAATGCCACAGGCAATATCTGTAACCCCTGAGGAGCGTGAAGCCATTGAACGGCTCGAAGCAATGGGGTTTGATAGAGCCATTGTTTTAGAGGTTTTCTTTGCCTGCAACAAAAACGAGGAGCTTGCTGCTAATTATCTCCTAGATCATATGCATGAATTCGAGGAATGA 1179 48.6 MKIFVKTLKGTHFEVEVQPEDTVADVKKNIESVHDADVYPATQQMLIHQGKVLKDTTTLKENSVAENSFVVIMLTKSKCSSGEASTAQAAPVTKAQAPSAPPALTPASTVSQAPITSAPPAPSPPIPAPIPAAAATSSPTAASEPDVYGQVASNLVAGRNLDQTIQQILDMGGGTWDRETVIRALRAAFNNPERAVEYLYSGIPEQAEVPPVARVSASAGGAAPPAQPPQSTQPVPVPSSGPNANPLDLFPQGIPDSGTGAAGAGTLDFLRQSQQFQALRSMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGNILGQLAAGMPQAISVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFEE 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6645581 6651329 + Conep19aG0086700.1 Cone19ag0843 459280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0843 392 CDD Ubl_Rad23 1 74 - -
Cone19ag0843 392 CDD UBA2_RAD23_plant 344 386 - -
Cone19ag0843 392 Gene3D - 257 323 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Cone19ag0843 392 Gene3D - 1 80 - -
Cone19ag0843 392 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515(InterPro)
Cone19ag0843 392 FunFam UV excision repair protein RAD23 1 80 - -
Cone19ag0843 392 MobiDBLite consensus disorder prediction 90 146 - -
Cone19ag0843 392 Pfam UBA/TS-N domain 348 383 IPR015940 -
Cone19ag0843 392 Pfam UBA/TS-N domain 162 199 IPR015940 -
Cone19ag0843 392 Gene3D - 154 204 - -
Cone19ag0843 392 SUPERFAMILY UBA-like 158 212 IPR009060 GO:0005515(InterPro)
Cone19ag0843 392 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 384 - GO:0005654(PANTHER)|GO:0005829(PANTHER)|GO:0031593(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0070628(PANTHER)
Cone19ag0843 392 SMART ubq_7 1 75 IPR000626 GO:0005515(InterPro)
Cone19ag0843 392 FunFam UV excision repair protein RAD23 homolog 154 204 - -
Cone19ag0843 392 SUPERFAMILY Ubiquitin-like 1 78 IPR029071 -
Cone19ag0843 392 SUPERFAMILY XPC-binding domain 263 329 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Cone19ag0843 392 FunFam UV excision repair protein RAD23 B 257 323 - -
Cone19ag0843 392 Pfam XPC-binding domain 267 322 IPR015360 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Cone19ag0843 392 MobiDBLite consensus disorder prediction 214 244 - -
Cone19ag0843 392 Gene3D - 340 387 - -
Cone19ag0843 392 PRINTS DNA repair protein Rad23 signature 374 389 IPR004806 GO:0006289(InterPro)
Cone19ag0843 392 PRINTS DNA repair protein Rad23 signature 359 373 IPR004806 GO:0006289(InterPro)
Cone19ag0843 392 PRINTS DNA repair protein Rad23 signature 293 315 IPR004806 GO:0006289(InterPro)
Cone19ag0843 392 PRINTS DNA repair protein Rad23 signature 342 358 IPR004806 GO:0006289(InterPro)
Cone19ag0843 392 CDD UBA1_Rad23_plant 155 204 - -
Cone19ag0843 392 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 345 386 IPR015940 -
Cone19ag0843 392 MobiDBLite consensus disorder prediction 102 116 - -
Cone19ag0843 392 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515(InterPro)
Cone19ag0843 392 SMART uba_6 161 201 IPR015940 -
Cone19ag0843 392 SMART uba_6 348 385 IPR015940 -
Cone19ag0843 392 SMART CBM 265 308 IPR006636 -
Cone19ag0843 392 FunFam UV excision repair protein RAD23 homolog 339 387 - -
Cone19ag0843 392 NCBIfam UV excision repair protein Rad23 1 391 IPR004806 GO:0006289(InterPro)
Cone19ag0843 392 SUPERFAMILY UBA-like 329 390 IPR009060 GO:0005515(InterPro)
Cone19ag0843 392 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 160 202 IPR015940 -
Cone19ag0843 392 MobiDBLite consensus disorder prediction 117 132 - -
Cone19ag0843 392 MobiDBLite consensus disorder prediction 227 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0843 K10839 - - gmx:100809066 540.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0281 Cone-Chr17:1351204 Cone19ag0843 Cone-Chr19:6645581 8.97E-125 dispersed
Cone19ag0843 Cone-Chr19:6645581 Cone20ag1127 Cone-Chr20:7703434 1.02E-126 dispersed
Cone11ag0321 Cone-Chr11:1563588 Cone19ag0843 Cone-Chr19:6645581 2.02E-158 wgd
Cone13ag0836 Cone-Chr13:7561861 Cone19ag0843 Cone-Chr19:6645581 6.39E-211 wgd
Cone18ag1178 Cone-Chr18:8427419 Cone19ag0843 Cone-Chr19:6645581 1.15E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41