Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0847 ATGGCTAATGAACAGTTATATCCAATAGCTGTTCTTGTAGAGGAGCTGAAAAGTAATGATATCCAGCTGCGTCTGAACTCAATTCATAAGCTCTCTACAATAGCACGAGCTCTTGGGGAGGAACGGACCCGTAAGGAACTGATCCCTTTTTTGATTGAAAATAATGATGATGATGATGTGGTGCTTCTTGCAATGGCTGAGGAGTTGGGAGTCCTTATGCCATTTGTGGGGGGATTGGAGCATGCCCATGTTTTGCTCCCACCCTTAGAGACCCTTTGCACCGTTGAAGAAACAGTTGTCCGGGACAAGGCTGTGGACTCATTGTGCAAGATCGGTTCTCAGATGAGGGAGGCTGATTTGGCTGACTGGTTTGTTCCTCTGATTAAGAGATTGGCAGCTGGTGAATGGTTTACTACTCGTGCCTCTGCATGTGGGCTTTTTCATATTGCCTACCCTAGTGCCCCAGATACTTTGAAGGCAGAGTTACGTTCGCTATATGGCCAACTGTGTCAAGATGACATGCCTATGGTTAGGAGGTCTGCTGCAACAAATCTCGGGAAATTTTCGGCAAATGTTGAAATTGATTATCTAAAAACTGACATCAAGTCAATGTTTGAGTGTCTTACACAGGACGATCAAGACTCTGTTCGATTATTGGCTGTTGAGGGTTCTGCAGCATTGGGAAAGTTGTTGGGTCTCCAAGATTGTGTTACACATATTCTCCCTGTTATTGTTAGCTTCTCTCAGGATAAATCATGGCGTGTGAGATACATGGTTGCTAATCAATTACATGAGCTTTGTGAAGCTGTTGGGCCTGAGCCCACTAGGACGGATTTGCTGCCCGCATATGTGCGCTTGCTTCGGGACAATGAAGCTGAAGTTCGTATAGCAGCTGCTGGCAAAGTTACCAAGTTTTGTCAGATTTTAAGTCCTGAAATATCAATTCAGCATATTCTTCCCTGTCTGAAGGAACTATCATCAGATTCTTCCCAGCATGTTCGCTCTGCTTTGGCTTCAGTTATTAATGGAATGGCTCCCATACTGGGGAAGAAAATTCAATTTGTTATCTCGTGGCTCATGCAGGATGCGACAACTGAGCACCTCCTTCCCGTTTTTCTCTCTCTTCTGACGGATGAATTTCCTGACGTGCGCCTAAATATCATCAGCAATCTCGATCAAGTGAATCAGGTTATCGGAATCGATCTCCTCTCTCAATCCTTATTACCAGCTATTGCTGAGCTTGCAGAGGACAAACATTGGCGAGTTCGGCTTGCAATAATAGAATACATTCCTTTATTGGCAACTCAGTTGGGTGTAGGCTTTTTTGATGACAAGCTCGGTCCCCTTTGCATGCAGTGGTTACAGGATAAGGTTTCCACAATCCGTGATGCAGCTGCTAACAATTTGAAGCGCCTTGCAGAAGAATTTGGTCCTGAATGGGCGATGCAGCATATTATTCCGCAGGTTCTTGAGATGATGAATAGTCCACACTATTTGTATCGGATGACCATACTTTATGCAATCTCCCTTCTTGCCCCTGTACTGGGTTCAGAAATCACATGCTCAAATCTACTGCCAGTGGTCATCAGCACTTCCAAGGACAGAGTTCCAAACATCAAGTTCAATTTAGCAAAGGTTCTGCAGTCCCTAATTCCCATCGTTGATCAACCTGTGGTTGAGAAAACAATCCGTCCCTGCTTGGTGGAACTAAGCGAGGATCCAGATGTCGATGTCCGGTTTTTTGCTAACCAAGCGCTACAAGCAACTGATAATCTCATCGTCTCTTGCTAA 1791 44.78 MANEQLYPIAVLVEELKSNDIQLRLNSIHKLSTIARALGEERTRKELIPFLIENNDDDDVVLLAMAEELGVLMPFVGGLEHAHVLLPPLETLCTVEETVVRDKAVDSLCKIGSQMREADLADWFVPLIKRLAAGEWFTTRASACGLFHIAYPSAPDTLKAELRSLYGQLCQDDMPMVRRSAATNLGKFSANVEIDYLKTDIKSMFECLTQDDQDSVRLLAVEGSAALGKLLGLQDCVTHILPVIVSFSQDKSWRVRYMVANQLHELCEAVGPEPTRTDLLPAYVRLLRDNEAEVRIAAAGKVTKFCQILSPEISIQHILPCLKELSSDSSQHVRSALASVINGMAPILGKKIQFVISWLMQDATTEHLLPVFLSLLTDEFPDVRLNIISNLDQVNQVIGIDLLSQSLLPAIAELAEDKHWRVRLAIIEYIPLLATQLGVGFFDDKLGPLCMQWLQDKVSTIRDAAANNLKRLAEEFGPEWAMQHIIPQVLEMMNSPHYLYRMTILYAISLLAPVLGSEITCSNLLPVVISTSKDRVPNIKFNLAKVLQSLIPIVDQPVVEKTIRPCLVELSEDPDVDVRFFANQALQATDNLIVSC 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6667198 6671488 + Conep19aG0087100.1 Cone19ag0847 459284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0847 596 ProSiteProfiles HEAT repeat profile. 240 278 IPR021133 -
Cone19ag0847 596 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 8 588 IPR051023 GO:0000159(PANTHER)|GO:0005737(PANTHER)|GO:0006470(PANTHER)|GO:0019888(PANTHER)
Cone19ag0847 596 ProSiteProfiles HEAT repeat profile. 524 562 IPR021133 -
Cone19ag0847 596 ProSiteProfiles HEAT repeat profile. 162 200 IPR021133 -
Cone19ag0847 596 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 1 590 - -
Cone19ag0847 596 Pfam HEAT repeat 448 474 IPR000357 GO:0005515(InterPro)
Cone19ag0847 596 Pfam HEAT repeat 240 268 IPR000357 GO:0005515(InterPro)
Cone19ag0847 596 Pfam HEAT repeat 368 396 IPR000357 GO:0005515(InterPro)
Cone19ag0847 596 ProSiteProfiles HEAT repeat profile. 563 596 IPR021133 -
Cone19ag0847 596 ProSiteProfiles HEAT repeat profile. 485 523 IPR021133 -
Cone19ag0847 596 Gene3D - 2 589 IPR011989 -
Cone19ag0847 596 ProSiteProfiles HEAT repeat profile. 8 46 IPR021133 -
Cone19ag0847 596 ProSiteProfiles HEAT repeat profile. 279 317 IPR021133 -
Cone19ag0847 596 ProSiteProfiles HEAT repeat profile. 318 351 IPR021133 -
Cone19ag0847 596 ProSiteProfiles HEAT repeat profile. 407 445 IPR021133 -
Cone19ag0847 596 Pfam PPP2R1A-like HEAT repeat 273 349 IPR054573 -
Cone19ag0847 596 ProSiteProfiles HEAT repeat profile. 368 406 IPR021133 -
Cone19ag0847 596 SUPERFAMILY ARM repeat 3 587 IPR016024 -
Cone19ag0847 596 ProSiteProfiles HEAT repeat profile. 446 484 IPR021133 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0847 K03456 - - csv:101222376 1000.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0843 Cone-Chr13:7583643 Cone19ag0847 Cone-Chr19:6667198 1.33E-114 wgd
Cone19ag0847 Cone-Chr19:6667198 Cone6ag0459 Cone-Chr6:2260547 3.13E-105 wgd
Cone19ag0847 Cone-Chr19:6667198 Cone9ag0471 Cone-Chr9:2238704 4.80E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g285 . . . . . . Bma14g01702 . . Cmo18g01046 . . . Car18g00956 Sed08g0346 Cpe09g00287 . Bhi07g01344 Tan04g0882 Cmetu09g1399 Lac13g0477 Hepe01g1207 . . Cla05g02314 Cam05g2487 Cec05g2510 Cco05g2553 Clacu05g2482 Cmu05g2343 Cre05g2461 Cone13ag0843 Cone19ag0847 Cone6ag0459 Cone9ag0471 Lsi04g00272 Csa05g02597 Chy10g01132 Cme10g00275 . Blo11g00834 Bda07g01530 . Bpe11g01693 . . . . . . . . . . . Cpe04g01409 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003579 2 5 2 2 2 1 2 1 1 0 1 1 1 1 1 2 1 4 2 1 1 2 1 1 0 1 1 2 2 2 46