Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0849 ATGCAGAGCCTTAAGCCTACCTCAGCTCCTCCAAACCCTGATCTTTATTTCACTTCTTCCTTCTGTTTCAGGGGAGGAGAAGAAAGTGGAAGAAACGAAACGCGTTTTGAGGATTTTAGAGAGCTTGCACATTCCGCTTCTTCTGCTTTAGCTTTTCATAGCGACGATGCTGTTGATTTAAGCCCAAATTCTGTTTTCAGTCTGAAGTCAAGCACTTTCGTCACTCTTCCTCGTGACATACCGTACAGCACCTTCAACACGAGTATGGGATCGTCAGAGATAGTTCAAACTGGGCAGCAAATGATGTATAATACAAATGAGCCATCTACGGCGGCAGTTGCGGTGTCGTCGTTGGGAAACGGGAGCTTTGAGAACTGGGCTGATTCAGCTACAATGGCAGATCACAGTCAGCAGACTGACACCTCTACAGATGTTGATACAGATGACAGAAATCAGTTCCATGGAGTTCATCATGGAGCACTAGTAGCTGTTGATTCCATGGATCAATCTAAGACAAGAGTTGGTGACCAAAAAACTCTTCGGAGGCTTGCCCAGAATCGAGAAGCAGCACGGAAAAGCCGTCTAAGAAAGAAAGCTTATGTCCAGCAGCTCGAGAGTAGTCGTCATCGCCTCACACAACTCGAACAAGAGCTTCAACGTGCCCGCCAACAAGGCATTTTCATTACAACCGGACATTCTGGGGACCATGCTTCTTCAATTCCTGGAAATGGGGCCTTAGCATTTGATCTAGACTACGCGCGTTGGCTCGATGACCACCAAAGACTTATCAACGATCTAAGATCGGCCAGTAGTTCTCGAATGAGTGATAATGAATTACATTTCCTAGTGGATAATGTAATGTCACACTATGAAGAATTATTTAGACTAAAGAGCATAGCTGCTAAAGCGGATGTATTTCACATGCTTTCCGGCATGTGGAAAACACCAGCCGAGCGCTGCTTCATGTGGCTAGGTGGATTCCGTTCCTCCGAGCTCTTGAAGATTCTGGGGAACCATCTTGATCCGTTAACGGATCAACAGTTGATGGGGATATGCAATCTGCAACAGTCCTCGCAACAAGCAGAAGATGCATTGTCACAAGGAATGGAAGCTTTGCAACAGTCTTTTGTTGAGATGCTTTCTTCGAGCACTATGGGTTCGGATGTTTCTGGAAATGTTGCAGAGTACATGGGTCAAATGGCGATCGCAATGGGGAAGCTTGCTACACTTGAGAATTTCCTTCACCAGGCTGATCTTTTGAGGCAGCAGACTCTACAGCAGATGCATCGGATCTTGACTACTAGACAGGCTGCTCGGGCCCTACTTGTTATCAGCGATTATATGTCACGTCTCCGGGCGCTAAGTTCGTTATGGTTAGCACGTCCGCGAGAATGA 1395 46.45 MQSLKPTSAPPNPDLYFTSSFCFRGGEESGRNETRFEDFRELAHSASSALAFHSDDAVDLSPNSVFSLKSSTFVTLPRDIPYSTFNTSMGSSEIVQTGQQMMYNTNEPSTAAVAVSSLGNGSFENWADSATMADHSQQTDTSTDVDTDDRNQFHGVHHGALVAVDSMDQSKTRVGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRHRLTQLEQELQRARQQGIFITTGHSGDHASSIPGNGALAFDLDYARWLDDHQRLINDLRSASSSRMSDNELHFLVDNVMSHYEELFRLKSIAAKADVFHMLSGMWKTPAERCFMWLGGFRSSELLKILGNHLDPLTDQQLMGICNLQQSSQQAEDALSQGMEALQQSFVEMLSSSTMGSDVSGNVAEYMGQMAIAMGKLATLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYMSRLRALSSLWLARPRE 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6680349 6683154 - Conep19aG0087300.1 Cone19ag0849 459286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0849 464 SUPERFAMILY Leucine zipper domain 178 222 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0849 464 Pfam Basic region leucine zipper 176 220 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0849 464 CDD bZIP_HBP1b-like 178 230 - -
Cone19ag0849 464 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 181 196 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0849 464 SMART brlzneu 174 237 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0849 464 Pfam Seed dormancy control 263 336 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone19ag0849 464 Coils Coil 197 224 - -
Cone19ag0849 464 ProSiteProfiles DOG1 domain profile. 245 461 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone19ag0849 464 Gene3D - 177 226 - -
Cone19ag0849 464 PANTHER TRANSCRIPTION FACTOR TGA9 95 464 - -
Cone19ag0849 464 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 220 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0849 464 FunFam BZIP family transcription factor 177 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0849 Cone-Chr19:6680349 Cone5ag0986 Cone-Chr5:4227304 9.16E-151 dispersed
Cone13ag0845 Cone-Chr13:7594448 Cone19ag0849 Cone-Chr19:6680349 2.70E-298 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45335 PF01593 Amino_oxidase 6.70E-85 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0849 K14431 - vvi:100249239 623.624