Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0853 ATGAATTTTCCCCAGAAAATGCAGGGGAATAATAATAGCGGTTTGGGCTTTAAAGAGTATGTAGACGCTTTGGAAGCAGAACGTCGCAAGATTCAGGTTTTTCACCGTGAGCTTCCTCTCTGTTTAGAGCTTGTAACTCAAGCTATTGAATCATGCAGGCAACAGTTATCTGGAACGACGACGTCTGAGTATATGAATGGAGGGCAATCGGAATGTTCAGAGCAGACTTCAAGTCCAGTTTTGGAGGAATTCATGCCCATTAAAAGAGCTGCTACGGCTGCTACTGATCATTCTTTAGATTTTGATGATAAAGATGAACAATCTGATGATCGTAATAATAATACTAACTCTAATGATGGGATGAAGAATAAATTAGTGGGCCAGGCTGATTGGCTTAGATCTGCTCAGCTATGGAATCAAACCCCAGATCCACCCATCAAAGAGGATGAACCTAAAAAGGCGTCGGTTGTTGAGGTGAAGAGAAATGGGGGGGCGTTTCAGCCGTTTCATAGAGAAAAAGCTAGTCTTGTGAAAACTCGGCCAGCAGTGAGTACGCCCCAAGCACCTGCTGCTGCCAGTTCAACGGCGGGAACCACTGCCTCCGGCGGCGGAGGTCGTGGTGGTGCGACCTGCTTAAGAATTGAGAAAGAGAGTCAGAACAATAGAAAGCAGCGGCGGTGCTGGTCTCCCGAACTGCACCGACGGTTCCTGCATGCTCTGCAACAGCTTGGACGTTCGCATGCTGCAACACCAAAGCAAATTAGAGAGCTAATGAAGGTGGATGGGCTAACTAACGACGAAGTCAAAAGCCATTTACAGAAATATAGATTGCACACAAGAAGGCCAAGTTCTGCAGGACACAATAACGGCAGCCCAAGAGCACCCCAATTCGTGGTGGTGGGAGGCATATGGGTCCCACCACCCCCGGAATACACCGGTGGGGCTGCTGCAACCACACGATCTCCCCCGACAATTTACTCTTCGCAGCAGATGGTCTCGGTCTCACAGGACTCGGCAGCCGCCACGAGAAGGCCGTCCAGTGTATCAACCGATAACTTAGGAGAAGTTGGGGGAGGAGGAGGATCAGGCCTTCATTCTAACAATTCCCCGACCACTTCTTCCTCCTCTCACACTAGCACAGGTTCCCCTGTTTTGTAG 1158 49.14 MNFPQKMQGNNNSGLGFKEYVDALEAERRKIQVFHRELPLCLELVTQAIESCRQQLSGTTTSEYMNGGQSECSEQTSSPVLEEFMPIKRAATAATDHSLDFDDKDEQSDDRNNNTNSNDGMKNKLVGQADWLRSAQLWNQTPDPPIKEDEPKKASVVEVKRNGGAFQPFHREKASLVKTRPAVSTPQAPAAASSTAGTTASGGGGRGGATCLRIEKESQNNRKQRRCWSPELHRRFLHALQQLGRSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSSAGHNNGSPRAPQFVVVGGIWVPPPPEYTGGAAATTRSPPTIYSSQQMVSVSQDSAAATRRPSSVSTDNLGEVGGGGGSGLHSNNSPTTSSSSHTSTGSPVL 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6697499 6699462 - Conep19aG0087700.1 Cone19ag0853 459290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0853 385 MobiDBLite consensus disorder prediction 317 353 - -
Cone19ag0853 385 SUPERFAMILY Homeodomain-like 222 281 IPR009057 -
Cone19ag0853 385 MobiDBLite consensus disorder prediction 311 385 - -
Cone19ag0853 385 MobiDBLite consensus disorder prediction 180 201 - -
Cone19ag0853 385 MobiDBLite consensus disorder prediction 93 123 - -
Cone19ag0853 385 NCBIfam myb-like DNA-binding domain, SHAQKYF class 223 278 IPR006447 GO:0003677(InterPro)
Cone19ag0853 385 Gene3D - 222 280 - -
Cone19ag0853 385 MobiDBLite consensus disorder prediction 95 112 - -
Cone19ag0853 385 FunFam Myb family transcription factor 222 280 - -
Cone19ag0853 385 Pfam Myb-like DNA-binding domain 225 276 IPR001005 -
Cone19ag0853 385 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 337 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0853 385 MobiDBLite consensus disorder prediction 162 210 - -
Cone19ag0853 385 MobiDBLite consensus disorder prediction 362 385 - -
Cone19ag0853 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 220 280 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0767 Cone-Chr16:8634603 Cone19ag0853 Cone-Chr19:6697499 1.90E-46 dispersed
Cone19ag0853 Cone-Chr19:6697499 Cone2ag0272 Cone-Chr2:1393242 2.11E-47 dispersed
Cone13ag0852 Cone-Chr13:7621202 Cone19ag0853 Cone-Chr19:6697499 7.36E-172 wgd
Cone19ag0853 Cone-Chr19:6697499 Cone6ag0464 Cone-Chr6:2290524 3.31E-101 wgd
Cone19ag0853 Cone-Chr19:6697499 Cone9ag0476 Cone-Chr9:2270650 2.74E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45336 PF03357 Snf7 8.60E-12 CL0235 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0853 - - - 0.0