Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0854 ATGGAAGCAAGCAATTCCATAGATGAAAGCACAACAAGCGAATCCACCACCATTTCTCCGATAAAGCCGTCATCTTTTCCCGTCAAGGCCGCCTCTCCTCCGGGAAGCGGAGCAAGCATCATTCTAGACTCTTCCGATTCAAACGGCGTTGAAGCAGAGTCCCGTAAACTGCCATCCTCCCGTTTCAAAGGCGTCGTGCCTCAACCAAACGGGCGTTGGGGAGCTCAGATTTACGAGAAGCACCAGCGCGTCTGGCTCGGAACATTCAACGAAGAAGACGAAGCTGCACGGGCCTACGACATAGCCGCCCAACGGTTCCGCGGACGCGACGCTATCACAAACTTCAAGCCGCTTTTCCAAACTGGCGTCGCGGATGATTGCGAGACGGCGTTTCTCAACTCTCATTCGAAAGCGGAGATCGTGGACATGCTACGGAAACACACTTACGATGAGGAGCTTGAGCAGAGTAAGAGAAACTATAACGGCAGGTTGAACCGGGATGATCTAACGCGGACGCGAACCGGATCTGGGGAGTTGAACCGGGTTTCGAATGAACGGGAGTTGCTGTTTGAGAAAGCGGTTACGCCGAGTGACGTCGGCAAACTGAACCGGTTGGTGATTCCGAAACAGCATGCCGAAAAGCACTTTCCGCTGCAGAGTGGAGGAGGAGGAAGTGCTTCTTCTTCTTCTTCTTCTTCGTCCAAAGGGCTTCTGCTTAACTTTGAGGATTTTGGAGGGAAAGTGTGGCGGTTCAGGTACTCTTACTGGAACAGTAGTCAAAGCTATGTGTTGACCAAGGGATGGAGCCGGTTCGTGAAGGAGAAGAATTTGAAAGCCGGTGACATTGTGAGCTTTATGAGCGGGATCAGCGGACCGGGTGTTGAGAAGCAGAACCAGCTCTTCATTGACTGGAAGACGAGGAGTGTGAACCCGGTTCAGCAGCCGGTTCAGATGTTTAGACTGTTTGGGGTTAATATCTTGGAGTTGCCCGGGGTTGACGGGACTGGATCGTGTGGTGGGAAGAGAGTCAGAGAGATGGAGTCCATGGATTTTGACTGTAGTAAGAAGCAGAGGATTATTGGTGCTTTGTAA 1092 51.83 MEASNSIDESTTSESTTISPIKPSSFPVKAASPPGSGASIILDSSDSNGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAITNFKPLFQTGVADDCETAFLNSHSKAEIVDMLRKHTYDEELEQSKRNYNGRLNRDDLTRTRTGSGELNRVSNERELLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGGGGSASSSSSSSSKGLLLNFEDFGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFMSGISGPGVEKQNQLFIDWKTRSVNPVQQPVQMFRLFGVNILELPGVDGTGSCGGKRVREMESMDFDCSKKQRIIGAL 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6703569 6704804 - Conep19aG0087800.1 Cone19ag0854 459291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0854 363 MobiDBLite consensus disorder prediction 158 178 - -
Cone19ag0854 363 MobiDBLite consensus disorder prediction 1 58 - -
Cone19ag0854 363 SUPERFAMILY DNA-binding pseudobarrel domain 187 287 IPR015300 -
Cone19ag0854 363 ProSiteProfiles B3 DNA-binding domain profile. 190 308 IPR003340 GO:0003677(InterPro)
Cone19ag0854 363 MobiDBLite consensus disorder prediction 38 54 - -
Cone19ag0854 363 CDD B3_DNA 189 285 IPR003340 GO:0003677(InterPro)
Cone19ag0854 363 Pfam B3 DNA binding domain 190 286 IPR003340 GO:0003677(InterPro)
Cone19ag0854 363 Gene3D - 180 314 IPR015300 -
Cone19ag0854 363 Gene3D AP2/ERF domain 60 117 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0854 363 Pfam AP2 domain 60 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0854 363 ProSiteProfiles AP2/ERF domain profile. 61 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0854 363 MobiDBLite consensus disorder prediction 158 174 - -
Cone19ag0854 363 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 60 326 IPR044800 GO:0003700(InterPro)
Cone19ag0854 363 SMART rav1_2 61 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0854 363 SMART B3_2 190 295 IPR003340 GO:0003677(InterPro)
Cone19ag0854 363 MobiDBLite consensus disorder prediction 1 23 - -
Cone19ag0854 363 FunFam AP2 domain-containing protein RAP2.8 60 117 - -
Cone19ag0854 363 CDD AP2 60 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0854 363 SUPERFAMILY DNA-binding domain 60 116 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0476 Cone-Chr14:2312898 Cone19ag0854 Cone-Chr19:6703569 2.32E-46 dispersed
Cone19ag0854 Cone-Chr19:6703569 Cone5ag1280 Cone-Chr5:7047203 4.73E-48 dispersed
Cone13ag0853 Cone-Chr13:7632578 Cone19ag0854 Cone-Chr19:6703569 6.06E-233 wgd
Cone19ag0854 Cone-Chr19:6703569 Cone6ag0468 Cone-Chr6:2305115 2.33E-139 wgd
Cone19ag0854 Cone-Chr19:6703569 Cone9ag0480 Cone-Chr9:2293951 2.22E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45337 PF03357 Snf7 5.10E-12 CL0235 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0854 K09287 - rcu:8269518 451.825