Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone19ag0854 | ATGGAAGCAAGCAATTCCATAGATGAAAGCACAACAAGCGAATCCACCACCATTTCTCCGATAAAGCCGTCATCTTTTCCCGTCAAGGCCGCCTCTCCTCCGGGAAGCGGAGCAAGCATCATTCTAGACTCTTCCGATTCAAACGGCGTTGAAGCAGAGTCCCGTAAACTGCCATCCTCCCGTTTCAAAGGCGTCGTGCCTCAACCAAACGGGCGTTGGGGAGCTCAGATTTACGAGAAGCACCAGCGCGTCTGGCTCGGAACATTCAACGAAGAAGACGAAGCTGCACGGGCCTACGACATAGCCGCCCAACGGTTCCGCGGACGCGACGCTATCACAAACTTCAAGCCGCTTTTCCAAACTGGCGTCGCGGATGATTGCGAGACGGCGTTTCTCAACTCTCATTCGAAAGCGGAGATCGTGGACATGCTACGGAAACACACTTACGATGAGGAGCTTGAGCAGAGTAAGAGAAACTATAACGGCAGGTTGAACCGGGATGATCTAACGCGGACGCGAACCGGATCTGGGGAGTTGAACCGGGTTTCGAATGAACGGGAGTTGCTGTTTGAGAAAGCGGTTACGCCGAGTGACGTCGGCAAACTGAACCGGTTGGTGATTCCGAAACAGCATGCCGAAAAGCACTTTCCGCTGCAGAGTGGAGGAGGAGGAAGTGCTTCTTCTTCTTCTTCTTCTTCGTCCAAAGGGCTTCTGCTTAACTTTGAGGATTTTGGAGGGAAAGTGTGGCGGTTCAGGTACTCTTACTGGAACAGTAGTCAAAGCTATGTGTTGACCAAGGGATGGAGCCGGTTCGTGAAGGAGAAGAATTTGAAAGCCGGTGACATTGTGAGCTTTATGAGCGGGATCAGCGGACCGGGTGTTGAGAAGCAGAACCAGCTCTTCATTGACTGGAAGACGAGGAGTGTGAACCCGGTTCAGCAGCCGGTTCAGATGTTTAGACTGTTTGGGGTTAATATCTTGGAGTTGCCCGGGGTTGACGGGACTGGATCGTGTGGTGGGAAGAGAGTCAGAGAGATGGAGTCCATGGATTTTGACTGTAGTAAGAAGCAGAGGATTATTGGTGCTTTGTAA | 1092 | 51.83 | MEASNSIDESTTSESTTISPIKPSSFPVKAASPPGSGASIILDSSDSNGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAITNFKPLFQTGVADDCETAFLNSHSKAEIVDMLRKHTYDEELEQSKRNYNGRLNRDDLTRTRTGSGELNRVSNERELLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGGGGSASSSSSSSSKGLLLNFEDFGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFMSGISGPGVEKQNQLFIDWKTRSVNPVQQPVQMFRLFGVNILELPGVDGTGSCGGKRVREMESMDFDCSKKQRIIGAL | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 6703569 | 6704804 | - | Conep19aG0087800.1 | Cone19ag0854 | 459291 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone19ag0854 | 363 | MobiDBLite | consensus disorder prediction | 158 | 178 | - | - | |
Cone19ag0854 | 363 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Cone19ag0854 | 363 | SUPERFAMILY | DNA-binding pseudobarrel domain | 187 | 287 | IPR015300 | - | |
Cone19ag0854 | 363 | ProSiteProfiles | B3 DNA-binding domain profile. | 190 | 308 | IPR003340 | GO:0003677(InterPro) | |
Cone19ag0854 | 363 | MobiDBLite | consensus disorder prediction | 38 | 54 | - | - | |
Cone19ag0854 | 363 | CDD | B3_DNA | 189 | 285 | IPR003340 | GO:0003677(InterPro) | |
Cone19ag0854 | 363 | Pfam | B3 DNA binding domain | 190 | 286 | IPR003340 | GO:0003677(InterPro) | |
Cone19ag0854 | 363 | Gene3D | - | 180 | 314 | IPR015300 | - | |
Cone19ag0854 | 363 | Gene3D | AP2/ERF domain | 60 | 117 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag0854 | 363 | Pfam | AP2 domain | 60 | 108 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag0854 | 363 | ProSiteProfiles | AP2/ERF domain profile. | 61 | 116 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag0854 | 363 | MobiDBLite | consensus disorder prediction | 158 | 174 | - | - | |
Cone19ag0854 | 363 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 60 | 326 | IPR044800 | GO:0003700(InterPro) | |
Cone19ag0854 | 363 | SMART | rav1_2 | 61 | 122 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag0854 | 363 | SMART | B3_2 | 190 | 295 | IPR003340 | GO:0003677(InterPro) | |
Cone19ag0854 | 363 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cone19ag0854 | 363 | FunFam | AP2 domain-containing protein RAP2.8 | 60 | 117 | - | - | |
Cone19ag0854 | 363 | CDD | AP2 | 60 | 115 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag0854 | 363 | SUPERFAMILY | DNA-binding domain | 60 | 116 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone14ag0476 | Cone-Chr14:2312898 | Cone19ag0854 | Cone-Chr19:6703569 | 2.32E-46 | dispersed | |
Cone19ag0854 | Cone-Chr19:6703569 | Cone5ag1280 | Cone-Chr5:7047203 | 4.73E-48 | dispersed | |
Cone13ag0853 | Cone-Chr13:7632578 | Cone19ag0854 | Cone-Chr19:6703569 | 6.06E-233 | wgd | |
Cone19ag0854 | Cone-Chr19:6703569 | Cone6ag0468 | Cone-Chr6:2305115 | 2.33E-139 | wgd | |
Cone19ag0854 | Cone-Chr19:6703569 | Cone9ag0480 | Cone-Chr9:2293951 | 2.22E-141 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45337 | PF03357 | Snf7 | 5.10E-12 | CL0235 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone19ag0854 | K09287 | - | rcu:8269518 | 451.825 |