Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0856 ATGGCTGCTGTTGCAGCAGGAGGAGGAGTTACTGCACGAGCTCCCAACCTCCAACCTCTACAACCCAAACCCACTTCTTCCCCATTCCTCGTCAACAAGCTGATCAGAATCAAACCCATCTCCGATTCAAGAACTGCCTCCACTCGGAAACTCTTAGTCTCAGCAATGGCATCTAGCAGCGATTTTATCGACTCTGTTCATAATCTGTTTGTGGGAGTCGGAGTTGGGCTTCCTTGCACAGTAATGGAGTGCGGTGATATCATTTACAGAAGCACTCTTCCGAAATCAGATGGCTTAACGCTCACAACACCCGGTGCTGTTCTTGCTTTAGGTGCTTTATCTTATCTGTGGGCCACACCTGGAGTCGCTCCGGGTTTCTTCGACATGTTTGTTCTTGCATTTGTTGAGAGACTGTTCAGACCCACTTTCAGAAAAGATGATTTTATTCTGGGGAAGAAGTTGGGTGAGGGAGCTTTTGGTGTGGTTTATAGAGTTTCATTGTCTAATAAATCATCTGATAAGAAGGGAGGTGACTTGGTGTTGAAAAAGGCGACTGAATATGGTGCAGTGGAGATTTGGATGAACGAGCGTGTGCGAAGAGCTTGTGGAAGTAGCTGCGCTGATTTTATATATGGCTTTCTTGAGCGTTCTACGTCAAAGAAAGAAGGTGAATATTGGCTTATATGGCGATTTGAAGGGGAGGCTACATTATCGGATTTGGCGCAAAGCAAAGAATTCCCCTACAATGTAGAGAGAATGATTCTAGGTGAGGCACTGGATTTGCCCAAGGGATTAGAGCGGGAAAACAGAATCATTCAGACGATCATGAGACAGCTTTTATTTGCATTGGACGGTCTTCATTCGACAGGAATCGTGCATAGGGATATCAAGCCGCAGAATATCATTTTCTCTGAAGGATCTCGTACATTCAAGATTATTGATCTTGGAGCTGCAGCTGATTTACGAGTAGGCATTAACTATATCCCAAAGGAGTTTCTTCTAGACCCAAGGTATGCTGCACCGGAGCAATACATCATGAGCACCCAAACTCCATCTGCTCCCTCAGCTCCTGTGGCAACTGCACTCTCTCCAGTCCTATGGCAGCTGAATCTCCCTGATAGATTCGACATCTATAGTGCCGGTCTCATCTTCTTACAAATGGCATTCCCTTCTCTTCGGTCCGACAGTGGCCTGATTCAATTTAACCGTCAATTAAAGCGGTGCGACTATGATCTGGTTGCATGGAGGAGCAGCGTCGAGCCACGAGCCGGCCCTGAACTACGCCGTGGGTTCGAGTTGCTGGACTTAGATGGTGGAATTGGCTGGGAGCTACTAACTTCTATGGTTCGGTACAAGGCCCGTCAAAGAACAAGTGCAAAAGCGGCTTTGGCTCATCCTTACTTTGACAGGGAAGGACTATTGGCTCTTTCCTTTATGCAGAAATTGAGGATGCAATACTTTAGAACAACCCAGCAGGATTATGGAGAAGCTGCTAACTGGATTATTCGGTTAATGGCGAAATCTGGAACCGAGCAAGACGGTGGCTTCACTGAAGCCCAACTTCAAGAGCTCAGAGAAATGGAGCCTGAGAAGAAGAATAAGAAGAAGGCGAGCCCGCAAAGAAATGTTCTAGCTTCGGTTCTACGGCTGCAGAGGAAGATCTTGAGAACAATAAATGAGAGCATGGATGAGCTTAACCAAAGTAGGAAGAGCCTCTGGTGGAGCAGATGGATTCCAAGAGAGGAATGA 1749 46.6 MAAVAAGGGVTARAPNLQPLQPKPTSSPFLVNKLIRIKPISDSRTASTRKLLVSAMASSSDFIDSVHNLFVGVGVGLPCTVMECGDIIYRSTLPKSDGLTLTTPGAVLALGALSYLWATPGVAPGFFDMFVLAFVERLFRPTFRKDDFILGKKLGEGAFGVVYRVSLSNKSSDKKGGDLVLKKATEYGAVEIWMNERVRRACGSSCADFIYGFLERSTSKKEGEYWLIWRFEGEATLSDLAQSKEFPYNVERMILGEALDLPKGLERENRIIQTIMRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPSLRSDSGLIQFNRQLKRCDYDLVAWRSSVEPRAGPELRRGFELLDLDGGIGWELLTSMVRYKARQRTSAKAALAHPYFDREGLLALSFMQKLRMQYFRTTQQDYGEAANWIIRLMAKSGTEQDGGFTEAQLQELREMEPEKKNKKKASPQRNVLASVLRLQRKILRTINESMDELNQSRKSLWWSRWIPREE 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6713578 6717396 + Conep19aG0088000.1 Cone19ag0856 459293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0856 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0856 582 ProSitePatterns Protein kinases ATP-binding region signature. 154 182 IPR017441 GO:0005524(InterPro)
Cone19ag0856 582 SUPERFAMILY Protein kinase-like (PK-like) 133 470 IPR011009 -
Cone19ag0856 582 CDD STKc_SNT7_plant 152 468 - -
Cone19ag0856 582 FunFam Serine/threonine-protein kinase STN7, chloroplastic 259 473 - -
Cone19ag0856 582 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 50 579 - -
Cone19ag0856 582 Pfam Protein kinase domain 150 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0856 582 ProSiteProfiles Protein kinase domain profile. 148 468 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0856 582 SMART serkin_6 148 468 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0856 582 Gene3D Phosphorylase Kinase; domain 1 135 230 - -
Cone19ag0856 582 Gene3D Transferase(Phosphotransferase) domain 1 259 472 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0856 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0070 Cone-Chr14:382790 Cone19ag0856 Cone-Chr19:6713578 9.22E-92 dispersed
Cone15ag0074 Cone-Chr15:406995 Cone19ag0856 Cone-Chr19:6713578 3.33E-27 dispersed
Cone19ag0856 Cone-Chr19:6713578 Cone7ag1950 Cone-Chr7:12440276 1.16E-13 dispersed
Cone13ag0856 Cone-Chr13:7645752 Cone19ag0856 Cone-Chr19:6713578 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g261 Blo01g00485 Blo16g01053 Bda01g02095 . . . . . . . . . . . . . Cpe01g01762 . . . . . . . . . . . . . . Cone13ag0856 Cone19ag0856 . . . . . . . . . . . Bpe02g02285 Bma01g00154 . . . . Cma04g02007 . . . . . Bhi12g01376 . . . . . . . . . . . . . . Csa05g01509 . Cme09g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010559 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82396 None None None None Cone PK