Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0864 ATGTTCACGCCGCAGAGGAAAGAGTGGCAGGGGGCATCGCTCACGCCGAGGAGCGAAGCAAGAGGGGTGGGCTCTGTCTCTCGGAATATGGAGAAAGGTAAGGCAGTTGCGATTCTTGATGGTCCGCCACCGCCATTAGGTTTGCTGAATGAAAACGGGGTGGATAATTCTAACGTGGGGATGGGCAATGAGGATATGGAGGTTTGGAGGAGGTTTAAGGAGGCAGGGTTTTTGGACGAGGCTGCAATGGAGCGGAGAGACAGAGAGGCGCTCGAGGAGAAGGCTTCGAAGCTTCAAAATGAGCTCTTGGATTACCAGTATAACATGGGGCTTCTTCTGATTGAGAAGAAGGAATGGGTTTCAAAGTACGAAGAACTACAACAGGAGCTGGCCGAAACTGAGGAGATTCTCAAGCGCGAACATTCTGCCCATCTGATTGCAGTATCTGAAGTTGAAAGGAGAGAGGAGAATTTGAGGAAAGCCGTAGCTTTTGAGAAGCAGTGTGTTGCTGATCTTACAAAGTCCCTGCGAGGTGCGAGTGAAGAGCATGCTCAGCTTAAGCTTGAATCTGAGAAGAAATTGGCTGAAGCTAATGCTTTAACGTCTGGTCTCGAGGAAAAATCTCTGGAGGTTGAAAAGAAGCTGCATGCGGCTGATGCCAAGCTTGCTGAGGTGAACAGGAAGAGTTCAGAATTGGAGATGAAACTGCATGAGGTTGAGGCCCACGAAAGTGTATTCCGAAGGGAGCGTTTGTCCCTAAACACAGAGCAAGAAGTATATGAGCAGACTTTTCGTAAACAAAAAGATGACTTGCATCATTGGGAGAAAAAGTTGCAGGAACGGGAAGAGAGTCTAGCGAAGGGTCACAAAATCCTCAATGAGAGAGAGCATAAGGCAAATGAATACGACAAGACCTTTAAGCAGAAAGAGCAGGAGTTGGAGGAGATGCAGAAAAAGATTGATCAGTTAAGTTTATCGCTTAAAAAGAAGGAAGATGACATAAACCAAAGACTGGAAGAGTTAGAAGTTAAAGAGAAAGAAGCTGCTTCTGTGAGAAGCTCATTAGATTCAAAACAAAAGCAATTGCTAGCGCTAGAGGAAAAACTTTTTACTAGGGAAAAGGTAGAGATTCCACAGCTCCTCGAGGAGAGAAGGGTCATTATGGAGAAAGAGATGCAAGATTTTGAGTTGGAACTGGAAGAAAAGAGGGCATCTCTTGACAAGGAACTTAGTGGCAAGGTTCCTGCATTGGAGCAAAAGGAAGCTAAAATCAGGCATGAGGAAGAAAAATTGATGAAGCTAGAGAAGTCACTGGAGAACAAGTCAAATAGAGTAAAGGAGAAGGAGAAGGAACTTGAAGTGAAATCAAAAGCGTTAAAGGAGAATGAGAAGGCTTTGAAAGCTGAGGAGAAAAGTGTAAAGGTGGAAAGACAGAAAATGCTTGCTGATAGAGAGAGTTTGCAGTCTCTTATAGATGAGATTGAGAAAATAAGGGCTGAAAACACTCAGCAGGAGCTTCAGATTCATGAAGAGAGTGAAAAATTGAGTATAACTAGAGAAGACAGGTCAGAGTACATTCGTCTGCAATCAGAATTGAAACACGAAATAGAGAATTATAGACTTCAGAAGGAATTGCTTTTGAAGGATGGCGATGACTTAAAGCAGGAAAGGGATAGGTTTGAGAAAGAATGGGAGCTCTTGGATGAGAAAAGAACTGAATTTAGTAAGACACTAAAGGAAGTTGTTGAAGAGAGAGAAAAAATAGAGAAATCTCATTACTCTGAAGATGAAAGGTTGAAAGAAGAGAAACATGCATTGCAGGTCAAGATGCAGAGGGAGTTGGACGATCTCAAACTTCAGAAAGAAACATTTGAAGCAAACATGAAGCACGAGCAGCTTGTATTGTCCGGAAAAGTTGAAAATGAGCGAAATATAATGCTCCAAGATTTTGAATTGGAGAGACAGGATCTTGAGACTTGTTTGAGGAATAGGCAGGATGAAATGGAGAAAATTTTCAAAGAAAGAGAGGCAGCATTTGTTGAGGAGACTGAAAGAGAACAAAAGAATATCAAGTACTTGAATGAAATTGTTCTGAGAGAGAGGAAAGGATTAGCTTCTGAAAAACATCAAGTGGAAAAGGAAAAGGAGGCGGTAACTTTGAACAGGAAGCAGCTGGAATTAGACCAGCTTGAAATTGGGACTGATATTGATAAGCTAGATATGCTTAGCAAGAAACTTAAAGTTCAGCGCCAACAGCTTATTCAGGACAGACATCGCTTCTTGGATTTTGTTGAGAAGTGCAAGAGTTGCACAAATTGTGGTGAAAGCACGACTGAATTTGTATTCTCTGACCTTCAATTACCTGAGGTAGAAAATCAGAAGGACATTTATCTGCCAACACTGGATGATGAATCCTTAAAGAGTTTTCGTGGAAGATTTCCCTATCCTAAGTTGGACACTGGAGGACCAATTTCTTTGCTTCGTAAATGCACCTCCCTTTTTAAGCTGTCTCCTGGTAAGAAAACTGAGAATGTTGTCTCTCCAGCTTCAGTGGAACTGCCAGCACCACAGTCAAAGGAAGACATACTAGCAGAGGGACCTAGTGTACCACAACCATCCTTTGGAATTGTGAATCAATCTTCTGATGCTCAAAGATTCTCCTCTGACAACAAATTTATACAAGTAGAAGATGGGGATGCCTTGTCAGTTGATCAGAGTTTCTTGGATAGTAGGACACAAGAAGTTCCAGAAGATTCCCAACAGTCTGTTCCAGCTGGCGATGGACAAAAACCGGGGAGGAAACGCAAGACTGAAGTGCGCAGAACACGTTCAGTTAAGGCTGTTGTTGAAGATGCAAAGGCTTATCTTGGGGATCATGCAGAACAAGACCTTGATGTTTCTCAGTTACATAATGACACAGACCGGATCGATGAGCAAAGCGGAGGAGATAAAGTTTATATCAGGAAAACTGGTAAAACTAGCAGGAATTCTCAACGTGCACAAAATTCCAGAATTACTGGAAGTGAGCAGGATGCTTATGATAGTGAAGGGCCTTCCGATAGCGTCACAACTGGTGGGCGCAGAAAAAGGCAGAGGACAGTTGCTCCAGTTGTGAAGACCCAAGTAGAAAACCGATACAACCTAAGGCGACATAAGACTACAGATGCATCTCAAGCCTTGGATGACACAACATCTTTAAGAGGGAAGAAAAATGAAGGTAATTTGGTGAAGGAAGTGGGACCCAGTGGTGAAGCTGTTTCTGTGCCATCATCAAGCATTAATGTCAATGTCGATCCAATTAAAGGCTCGGTTCGAGTTACAACTACAAAAACTGTAGAGTTCTCAGAAAGAGTTTTCAAAACATCAACAAATGCTGTCGAAGATGAAAATTGTGTGGTGACAAAGTCGGATGAAATTGTAGAGTTGAGTGAGGAAATTAGTGGTACACCAGAACATGGTGCAGGGGAAGAGGAACAAAGCTTAATTCCAGAAGAAGAAGAAGAGTATGATGAGCCAGAGAATCCTGGTGGGGCTTCAATAGGAAAGAAGATATGGACTTTCTTTACAACATGA 3573 42.63 MFTPQRKEWQGASLTPRSEARGVGSVSRNMEKGKAVAILDGPPPPLGLLNENGVDNSNVGMGNEDMEVWRRFKEAGFLDEAAMERRDREALEEKASKLQNELLDYQYNMGLLLIEKKEWVSKYEELQQELAETEEILKREHSAHLIAVSEVERREENLRKAVAFEKQCVADLTKSLRGASEEHAQLKLESEKKLAEANALTSGLEEKSLEVEKKLHAADAKLAEVNRKSSELEMKLHEVEAHESVFRRERLSLNTEQEVYEQTFRKQKDDLHHWEKKLQEREESLAKGHKILNEREHKANEYDKTFKQKEQELEEMQKKIDQLSLSLKKKEDDINQRLEELEVKEKEAASVRSSLDSKQKQLLALEEKLFTREKVEIPQLLEERRVIMEKEMQDFELELEEKRASLDKELSGKVPALEQKEAKIRHEEEKLMKLEKSLENKSNRVKEKEKELEVKSKALKENEKALKAEEKSVKVERQKMLADRESLQSLIDEIEKIRAENTQQELQIHEESEKLSITREDRSEYIRLQSELKHEIENYRLQKELLLKDGDDLKQERDRFEKEWELLDEKRTEFSKTLKEVVEEREKIEKSHYSEDERLKEEKHALQVKMQRELDDLKLQKETFEANMKHEQLVLSGKVENERNIMLQDFELERQDLETCLRNRQDEMEKIFKEREAAFVEETEREQKNIKYLNEIVLRERKGLASEKHQVEKEKEAVTLNRKQLELDQLEIGTDIDKLDMLSKKLKVQRQQLIQDRHRFLDFVEKCKSCTNCGESTTEFVFSDLQLPEVENQKDIYLPTLDDESLKSFRGRFPYPKLDTGGPISLLRKCTSLFKLSPGKKTENVVSPASVELPAPQSKEDILAEGPSVPQPSFGIVNQSSDAQRFSSDNKFIQVEDGDALSVDQSFLDSRTQEVPEDSQQSVPAGDGQKPGRKRKTEVRRTRSVKAVVEDAKAYLGDHAEQDLDVSQLHNDTDRIDEQSGGDKVYIRKTGKTSRNSQRAQNSRITGSEQDAYDSEGPSDSVTTGGRRKRQRTVAPVVKTQVENRYNLRRHKTTDASQALDDTTSLRGKKNEGNLVKEVGPSGEAVSVPSSSINVNVDPIKGSVRVTTTKTVEFSERVFKTSTNAVEDENCVVTKSDEIVELSEEISGTPEHGAGEEEQSLIPEEEEEYDEPENPGGASIGKKIWTFFTT 1190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6765059 6770721 + Conep19aG0088800.1 Cone19ag0864 459301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0864 1190 MobiDBLite consensus disorder prediction 1052 1090 - -
Cone19ag0864 1190 MobiDBLite consensus disorder prediction 909 926 - -
Cone19ag0864 1190 MobiDBLite consensus disorder prediction 991 1024 - -
Cone19ag0864 1190 Coils Coil 81 108 - -
Cone19ag0864 1190 MobiDBLite consensus disorder prediction 909 945 - -
Cone19ag0864 1190 Coils Coil 417 479 - -
Cone19ag0864 1190 Coils Coil 169 196 - -
Cone19ag0864 1190 Coils Coil 487 514 - -
Cone19ag0864 1190 PANTHER PROTEIN CROWDED NUCLEI 4 1 1190 IPR040418 GO:0005634(InterPro)|GO:0006997(InterPro)
Cone19ag0864 1190 Coils Coil 385 405 - -
Cone19ag0864 1190 Coils Coil 647 667 - -
Cone19ag0864 1190 Coils Coil 292 368 - -
Cone19ag0864 1190 MobiDBLite consensus disorder prediction 963 1034 - -
Cone19ag0864 1190 Coils Coil 529 563 - -
Cone19ag0864 1190 Coils Coil 607 627 - -
Cone19ag0864 1190 Coils Coil 116 143 - -
Cone19ag0864 1190 MobiDBLite consensus disorder prediction 963 990 - -
Cone19ag0864 1190 Coils Coil 708 728 - -
Cone19ag0864 1190 MobiDBLite consensus disorder prediction 1143 1182 - -
Cone19ag0864 1190 MobiDBLite consensus disorder prediction 1 28 - -
Cone19ag0864 1190 Coils Coil 215 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0864 K27866 - - vvi:100242259 1098.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0601 Cone-Chr16:7779012 Cone19ag0864 Cone-Chr19:6765059 1.02E-99 dispersed
Cone19ag0864 Cone-Chr19:6765059 Cone2ag0405 Cone-Chr2:2131786 1.61E-120 dispersed
Cone13ag0864 Cone-Chr13:7687729 Cone19ag0864 Cone-Chr19:6765059 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0864 Cone19ag0864 . . . Csa05g02073 . . . Blo11g00826 Bda07g01523 . Bpe11g01685 . . . . Cmo04g02051 . . . Car04g01940 . . . Bhi12g00824 . . . . . Lcy10g0868 Cla01g00563 Cam01g0586 Cec01g0578 Cco01g0602 Clacu01g0581 Cmu01g0552 Cre09g1955 Lsi09g00612 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004989 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 3 4 1 1 1 1 1 39