Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0871 ATGCACAGCGTCTATGTTAGCTCAACTCTATACTCTTTTAGAACAAAAGGGTCTCTTTCATTTTCCTCGACCGATTACTCCTGCTTGTTGAACGAAAGATTTGGGAAAAACCCATTTCAAATTGCATCATCATCATCTTCGGGTAGTTGTTGTTCTTCTTGTGATGAATATTCAATCCATAGAAGGTTTCCCATCAATCCTACTTTTCTCTATGGGTTGAGGCAATCCACTTTTCTGCATTTTTCACCTTCTAGAAGATTGGTTTTAGTGGGTTCTGACCGGTTCTATTACCGGTTACCGGTTTACACCAGGCTAGATACGGGTTGTTATGAGACTCCTTACTATGTTAGGGGGAGGAGGACGATATGTGGTAGAAGTGGGAAAAGGAGAGATGGAAGATGCTCTTGTATGATTTCAGAGGGAAAGAATGACGTACATAGGTTAAGTGGTTTTAATGATCATGGAGATAATGTTGAGGAAGTTCTGAGCTTTTTGAGTGAGGAGGTGGGAGAGGAATGTTTTAAGGGTAGAGAGAGGAGGAGTTCATTTACGAAGTCCGGATTGGAGATAAAGGGAAGTTTAATTTCATCAGAAAGAGTAGAATCGGAGCAACGAGCGAGTAATAGTGGTATAAAGAGGAATATTAGTTCATACGAAAGGAGAAGGAAAAATAAGAGGTTTGGGATTTCAGGGAGTAAATTGGACCGTAAAGTTGAATTGGTCAAGATTGACTTAGGTGAAGAGTATAGACAAAATGAAGGGAGAGAAGTTCATTTGAAAGGTCAGAATCTTAGGAGAAGGAAAGAAGGTTCTAGTTGTTCATCGTATTACTCATTTTCACCTTCTGAGGATAATTCAGAGAGTGATAGCGAAATCTATGAAAAGCAGGGGGGGCAATGGAAATTCGTTGGAGAATCCTCTAGTGGTTATGGGAAACAACTGGATATGAGTGAAGAAGGTAGAGCGAATGAAAAAGTGGTACTAGGGCATGAGAGATATGGAAATGAGAAGAAGGTAAATCAAGATGGGAAGAATTTGGAGAATGTACGTATTAGTGAAGTGTCAATGACCAATCAAAGTGGTTATGAAAAGGCCTCTTCTTCTTTGGGTTCTCACAATAAGTTCAGTTACAAGGAATTGGACGAGGAAAGAAGGAAGCAGTCTGACTTGTTTGATATCGAAGGAAAATTCCACAAAATTACAGAAATACCACAAAAACCGAAGAATCTTGTTAGAGAAGTATCCATGAGCGATCAAAGTGGTTATGGAAAGGCTTCTTCTTCTTCTTCTTTGAGTTCTCACAATATGGTCAGTTACAAGGAATTGGAGGAAGAAAGAAGAAAGCAGTCTGTCTTGTCTGAAACCAAAGGAAAATACCACAAAATTACAGAAATACCACAAAAACCTAAGAAGCTTGTTAGAGAAGTGTCCACGAGCAATCAAATCTGTTACAAGGAATTGGAGGAAGAAAGAAGAAATCAGTCTGTCTTGTCTGAAACCGAAGGAAAATACCACAAAATTACAGAAATATCACAAAAACCTAAGAAGCTTGTTAGAGAAGTGTCCACGAGCGATCAAATTGGTTATGAACAGGCTCCTTCTTCTTATTCAAGTTCCTACAAGAAGTTTAGTTACAAGGAATTGGACGAGGAAAGAGGGAAGCAGTCTCTCTTGTCTGAAACCAAAGGAAAATACCAAAAAATTATGGAAATACCGGAAGTTCATGAAACTGGTGTTGGAAAAACTTCTCAGCCTGAAAAGAGAAATATGGGTGGGCAAGTACATGTTGAGATTGAAAATAAAAGAATCTATGACTCTACGGTGAACAGAGAAGAAAGGAAGAATTATTCGATTGAAGATATATTAGTAATCAGAGATGGCAATACTGGAAAAACTCGAGTAAAGAACCATGAGCAAAAATTGAACATGGTTTCCCCTTCATTACCAGAAGCAATAGATCTTCATTCTATGACTGATATAAGAGTTTCTAAGAGAATTGAATCCCGAAAAGGTTCCCAAGATATTTCACTAATTCATACTGCCTACAAAGAGGTGGTTACAAATACTGAAAAGAAAATTACGAATGAAAAGCGTAATGCTAAGATCTTAGTGGAAAAACCTGTTATGGAAGCAAGAAAACCGTCACAAAGACCTAGTGAAGAAGAATCAAGCAACCAAGCTTCTTCTCGATTTGTTTCCCAGGCTAGAGTTCAGGAAATTGATGCGGAGGAAGAAGATGATATAAGATCACAGGCAATGTTAATCCCTCCCCAATCTCAATTCATAGCTAGGCATCCTAGCCATGTTGAGGTAACTGAGTTGACCAGTAGAGTAGAAACTCAAGAAGCTTCCGGAAGAATGTCGGAAAGCAGTGGGAGTGGTGAAAAATGTTGGGAGCCAGAGGAGGATGTTATGGGTTCAGTTAATCGTTTGGAGAATTCGTCTTCTCGGATTGTAGGGGAGTTTATTGAACAAGCGGTGATTGATGAAGGCTTGACTTCTGAAATCCAGAAGGAAGAGGAGGAAGTACCGAAGGGTCCGTCTGATGATTTATGGCATGTGATGGTGCCGCCATCTGTTCAGCAAACAAACCAATTGGAGGGACCCAAGAGAATTGAGAAAACAGAGAATGTTGTAGTGAAGAGAAGTCGAAGGTCTTTATGGAATGTTATTTCTGGTATGGTTCGACTTGGGTGGGGTTCAAATACTGAAACTGCCCCTAGCTCTGATGTGAAATCTGGCGGGAAAGTTTCATCAAATGAGTCTGTTAGTAGTGATGCATGGTTTTCTGGTCGGGAGCATGAGGATCATGAGAATGGGAGAAAAAAAGGGAGAGCTTTGACTGAAGAATCAGCATCTTCTGGTAGGCTGGAAAGTGGGAGGAATGCTGCTCAAATACCAGAGGTATCTGATAAAACAAGATCAACGAATAAAAGGGTATTTCATAAAGGCGATACCTCATCTTCTCTGGAGGAAAAAACGGGTTTTAATGGAGATGGAGAGAGAATTCTTCAAGTTGCTTCTTCTGGTTCGGAAATAGCAAAATCATCACTGCCATTACGTGCTCAAGAATTAAGATCTCCCACTATTAAAGGAATTTCAAATACTGGCATTCAGAAAGTTTATTCTGGTTCAGAATTAGTACAATCTTCATCGCCATCGTATGCTCAAGAATTGAGAAGATCTCCCACTGTTGAAGGACGGTCAAAAACTAGTAGAACTAATGTTAGCAGTTCATCAGAGAGGTTGCCGGAATTAGTAGCAAGTCATGAGGCAAAGGAAGGGGAATTGAAACAGAGGAAGCTTCAAAGAACAAAACAAGTGGAACGGGATAGGCTTGAGGAATGGGAAGAGGCATCTACTATTGAAACCGAACAATGGAAAATTGATGAAATGTTTATGAGAGAAGCACTTCAAGAATCCAAGAAGGCTGCTGATGCTTGGGAGGTCCCAGTTGGGGCCGTTTTGGTCCAACACGGGAAGATTATTGCTCGTGGGTTCAACCTTGTTGAAGAGTTACGGGATTCAACTGCCCATGCTGAACTTATATGTATTAGAGAGGCTTCAAAGCAGCTTAGGACATGGAGGCTTGCAGAAACTACCCTTTACGTGACCCTAGAACCATGTCCGATGTGTGCCGGAGCAATATATCAAGCACGGATTGACACCGTTGTATGGGGAGCTCCCAATAAGCTTCTTGGAGCAGATGGAAGCTGGATTAAACTTTTTCCAGACGGGGGAGAAGGAAGTGGGTCAGAACAGAGCGTTAAACCGGCTGCTCCCGTGCATCCATTTCACCCAAAAATAAAGGTGAGGCGAGGAGTACTAGCGGCAGAGTGTTCAGACGCAATGCAACAATTCTTCCAGCTAAGGAGGAAGAAGGTTAAGAAAGAGAAAGGAGACCCTTCTTCTTCACCTACTCCTCCAAATCCAAATTCGTTTATTCCCAGTAGACATCAGCCGATCAAGTTCTTCACCAAGATGCATAATATTTTCTACATCATCTTCTGCTTGTAA 4017 40.83 MHSVYVSSTLYSFRTKGSLSFSSTDYSCLLNERFGKNPFQIASSSSSGSCCSSCDEYSIHRRFPINPTFLYGLRQSTFLHFSPSRRLVLVGSDRFYYRLPVYTRLDTGCYETPYYVRGRRTICGRSGKRRDGRCSCMISEGKNDVHRLSGFNDHGDNVEEVLSFLSEEVGEECFKGRERRSSFTKSGLEIKGSLISSERVESEQRASNSGIKRNISSYERRRKNKRFGISGSKLDRKVELVKIDLGEEYRQNEGREVHLKGQNLRRRKEGSSCSSYYSFSPSEDNSESDSEIYEKQGGQWKFVGESSSGYGKQLDMSEEGRANEKVVLGHERYGNEKKVNQDGKNLENVRISEVSMTNQSGYEKASSSLGSHNKFSYKELDEERRKQSDLFDIEGKFHKITEIPQKPKNLVREVSMSDQSGYGKASSSSSLSSHNMVSYKELEEERRKQSVLSETKGKYHKITEIPQKPKKLVREVSTSNQICYKELEEERRNQSVLSETEGKYHKITEISQKPKKLVREVSTSDQIGYEQAPSSYSSSYKKFSYKELDEERGKQSLLSETKGKYQKIMEIPEVHETGVGKTSQPEKRNMGGQVHVEIENKRIYDSTVNREERKNYSIEDILVIRDGNTGKTRVKNHEQKLNMVSPSLPEAIDLHSMTDIRVSKRIESRKGSQDISLIHTAYKEVVTNTEKKITNEKRNAKILVEKPVMEARKPSQRPSEEESSNQASSRFVSQARVQEIDAEEEDDIRSQAMLIPPQSQFIARHPSHVEVTELTSRVETQEASGRMSESSGSGEKCWEPEEDVMGSVNRLENSSSRIVGEFIEQAVIDEGLTSEIQKEEEEVPKGPSDDLWHVMVPPSVQQTNQLEGPKRIEKTENVVVKRSRRSLWNVISGMVRLGWGSNTETAPSSDVKSGGKVSSNESVSSDAWFSGREHEDHENGRKKGRALTEESASSGRLESGRNAAQIPEVSDKTRSTNKRVFHKGDTSSSLEEKTGFNGDGERILQVASSGSEIAKSSLPLRAQELRSPTIKGISNTGIQKVYSGSELVQSSSPSYAQELRRSPTVEGRSKTSRTNVSSSSERLPELVASHEAKEGELKQRKLQRTKQVERDRLEEWEEASTIETEQWKIDEMFMREALQESKKAADAWEVPVGAVLVQHGKIIARGFNLVEELRDSTAHAELICIREASKQLRTWRLAETTLYVTLEPCPMCAGAIYQARIDTVVWGAPNKLLGADGSWIKLFPDGGEGSGSEQSVKPAAPVHPFHPKIKVRRGVLAAECSDAMQQFFQLRRKKVKKEKGDPSSSPTPPNPNSFIPSRHQPIKFFTKMHNIFYIIFCL 1338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6823798 6828346 - Conep19aG0089500.1 Cone19ag0871 459308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0871 1338 MobiDBLite consensus disorder prediction 928 949 - -
Cone19ag0871 1338 MobiDBLite consensus disorder prediction 775 799 - -
Cone19ag0871 1338 MobiDBLite consensus disorder prediction 1295 1316 - -
Cone19ag0871 1338 MobiDBLite consensus disorder prediction 270 286 - -
Cone19ag0871 1338 MobiDBLite consensus disorder prediction 270 291 - -
Cone19ag0871 1338 Pfam MafB19-like deaminase 1131 1241 IPR028883 GO:0002100(InterPro)|GO:0008251(InterPro)
Cone19ag0871 1338 Coils Coil 1099 1119 - -
Cone19ag0871 1338 MobiDBLite consensus disorder prediction 972 989 - -
Cone19ag0871 1338 MobiDBLite consensus disorder prediction 899 996 - -
Cone19ag0871 1338 MobiDBLite consensus disorder prediction 899 927 - -
Cone19ag0871 1338 MobiDBLite consensus disorder prediction 775 791 - -
Cone19ag0871 1338 MobiDBLite consensus disorder prediction 952 971 - -
Cone19ag0871 1338 Gene3D Cytidine Deaminase, domain 2 1117 1305 - -
Cone19ag0871 1338 MobiDBLite consensus disorder prediction 1068 1084 - -
Cone19ag0871 1338 MobiDBLite consensus disorder prediction 720 735 - -
Cone19ag0871 1338 MobiDBLite consensus disorder prediction 704 719 - -
Cone19ag0871 1338 SUPERFAMILY Cytidine deaminase-like 1123 1296 IPR016193 GO:0003824(InterPro)
Cone19ag0871 1338 CDD nucleoside_deaminase 1134 1240 - -
Cone19ag0871 1338 MobiDBLite consensus disorder prediction 1049 1084 - -
Cone19ag0871 1338 FunFam tRNA-specific adenosine deaminase 1123 1303 - -
Cone19ag0871 1338 Hamap tRNA-specific adenosine deaminase [tadA]. 1134 1292 IPR028883 GO:0002100(InterPro)|GO:0008251(InterPro)
Cone19ag0871 1338 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 1128 1250 IPR002125 -
Cone19ag0871 1338 MobiDBLite consensus disorder prediction 704 745 - -
Cone19ag0871 1338 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 1108 1295 - GO:0009507(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0871 K11991 - - vvi:100259373 707.983
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1281 Cone-Chr18:8973599 Cone19ag0871 Cone-Chr19:6823798 7.51E-19 dispersed
Cone13ag0870 Cone-Chr13:7754225 Cone19ag0871 Cone-Chr19:6823798 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32