Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0878 ATGGAATTTTTCTGGGCTGTGGCCTTGATTTGCTTATGGAGCTCTTCTTCTGCATATAGCTCTCTTACTGCAGAAGGTGTCAACTATGAAGTTCAAGCTTTGATGGCCATTAAGAATAGTCTAGGGGATCCTCATTCCATTCTGAGTTGGGATGAACATGCTGTGGATCCATGTAGTTGGAACATGATCACTTGCTCTCCTGATAAATCAGTAATTGCTCTAGGAGCTCCGAGTCAGAATTTATCAGGCACGCTCTCACCAAGCGTTGGAAACTTGACTAATCTCCAGTCTCTGTTTCTTCAGGATAATATGATTTCCGGGCGGATCCCGTCTGACCTTGGGAAGCTTCCGAAGCTTCATACGCTTGACCTTTCGAATAATAACTTCTCCGGAGAAATACCTTCTACTCTCTCTAATTTGAAAAGCCTGCAATATCTGCGGTTGAAAAATAACTGTCTTTCTGGTGAAATTCCTTCATCAATAGCTAACATGACTCAGCTCGCCTTGCTGGACTTGTCTTACAACAACTTGAGAGGCCCCCTACCCAGATTGCTCACTAAAACATTCAACCTTACCGGAAACTCTCTCATATGTTCGACCATACCAAAACAAGAATGCAATGGAACCACTCCAATCCCTCTCCCCTTCACTGTCAACACTTCCCAAAATCCTCAATCTTTCGGGACACCAAAGGGCCGGAAAATCGCCATAGCCTTGGGGTCAAGCTTAGGCAGCCTATGTCTCATTACTCTCGCCTTCACTTTCTTTCTTTGGCAGAAACAAAAAACCAACCGGCAAAAATTATTAGACGCTAATGAACAACACTTCAAAGAAGTCTGCTTAGGGAACCTAAAGAAGTTCCCATTCCGAGAACTCCAGATTGCCACAAACAACTTCAGCCACAAAAACTTGGTCGGAAAGGGCGGTTTCGGAAATGTCTATAAAGGGTATCTTCAAGACGGAATGGTTGTGGCGGTCAAACGGCTCAAGGATGGAAATGCAGCCGGCGGCGAGATCCAGTTTCAGACCGAAGTTGAGATGCTTAGCCTGGCGGTGCACCGGAATCTCCTCAAGCTCCATGGGTTCTGTATGACGGCCACTGAGCGGCTTCTTGTTTATCCCTACATGTCCAATGGGAGTGTTGCTTCCCGTCTCAAAGCAAAGCCATCTCTAGATTGGAATACAAGGAAAAGAATAGGATTGGGAGCAGCAAGAGGGTTACTTTACCTACATGAGCAATGTGATCCCAAGATAATTCACAGAGACGTGAAGGCTGCAAATATACTACTCGACGATGATTGTGAAGCCGTGGTGGGAGATTTCGGCCTAGCAAAGTTATTGGACCATAGAGACTCACATGTGTCAACTGCAGTGAGAGGTACTGTAGGCCACATTGCACCTGAATATCTCTCCACTGGCCAGTCCTCTGAGAAAACAGACGTTTTCGGGTTTGGAATTTTGCTTCTTGAGTTAATATCTGGCCAAAGAGCAATTGAGTTCAGAAAAGTGCCAAACCAGAAAGGAGCAATGCTTGATTGGGTGAAGAAAATTCACCAAGAAAAGAAGATTGACATGCTTGTTGACAAAAAGATAAGCTATGATCGTATCGAGCTGGAAGAAATGGTTCAGGTTGCGCTCCTATGTACTCAATATCTTCCGAGTTTTCGGCCAAAGATGTCGGAAGTGGTCCGGATGCTAGAAGGAGACGGGCTTGCAGAGAAATGGGAAGCTTCTCAGAGAGTAGACTCGACAAGGGGTAGTAAAGCAAATGAATTTTCTTATTCGGAAAGATACTCTGATCTTACTGATGACTCTTCATTGCTTGCACAAGCAATGGAGCTTTCTGGACCAAGATGA 1857 44.96 MEFFWAVALICLWSSSSAYSSLTAEGVNYEVQALMAIKNSLGDPHSILSWDEHAVDPCSWNMITCSPDKSVIALGAPSQNLSGTLSPSVGNLTNLQSLFLQDNMISGRIPSDLGKLPKLHTLDLSNNNFSGEIPSTLSNLKSLQYLRLKNNCLSGEIPSSIANMTQLALLDLSYNNLRGPLPRLLTKTFNLTGNSLICSTIPKQECNGTTPIPLPFTVNTSQNPQSFGTPKGRKIAIALGSSLGSLCLITLAFTFFLWQKQKTNRQKLLDANEQHFKEVCLGNLKKFPFRELQIATNNFSHKNLVGKGGFGNVYKGYLQDGMVVAVKRLKDGNAAGGEIQFQTEVEMLSLAVHRNLLKLHGFCMTATERLLVYPYMSNGSVASRLKAKPSLDWNTRKRIGLGAARGLLYLHEQCDPKIIHRDVKAANILLDDDCEAVVGDFGLAKLLDHRDSHVSTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRAIEFRKVPNQKGAMLDWVKKIHQEKKIDMLVDKKISYDRIELEEMVQVALLCTQYLPSFRPKMSEVVRMLEGDGLAEKWEASQRVDSTRGSKANEFSYSERYSDLTDDSSLLAQAMELSGPR 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6886699 6889753 + Conep19aG0090300.1 Cone19ag0878 459315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0878 618 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Cone19ag0878 618 Gene3D Phosphorylase Kinase; domain 1 268 375 - -
Cone19ag0878 618 Pfam Leucine Rich Repeat 94 116 IPR001611 GO:0005515(InterPro)
Cone19ag0878 618 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515(InterPro)
Cone19ag0878 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0878 618 SUPERFAMILY Protein kinase-like (PK-like) 279 567 IPR011009 -
Cone19ag0878 618 ProSiteProfiles Leucine-rich repeat profile. 118 141 IPR001611 GO:0005515(InterPro)
Cone19ag0878 618 Gene3D Transferase(Phosphotransferase) domain 1 376 586 - -
Cone19ag0878 618 SMART serkin_6 299 566 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0878 618 SUPERFAMILY L domain-like 28 301 - -
Cone19ag0878 618 Gene3D Ribonuclease Inhibitor 27 208 IPR032675 -
Cone19ag0878 618 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 618 - -
Cone19ag0878 618 ProSiteProfiles Protein kinase domain profile. 299 576 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0878 618 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524(InterPro)
Cone19ag0878 618 FunFam Somatic embryogenesis receptor-like kinase 1 376 586 - -
Cone19ag0878 618 FunFam Putative LRR receptor-like serine/threonine-protein kinase 27 208 - -
Cone19ag0878 618 FunFam Somatic embryogenesis receptor kinase 1 268 375 - -
Cone19ag0878 618 Pfam Protein tyrosine and serine/threonine kinase 302 566 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0878 Cone-Chr19:6886699 Cone9ag0505 Cone-Chr9:2417772 1.25E-228 dispersed
Cone9ag0504 Cone-Chr9:2416472 Cone19ag0878 Cone-Chr19:6886699 9.14E-39 dispersed
Cone13ag0880 Cone-Chr13:7810409 Cone19ag0878 Cone-Chr19:6886699 0 wgd
Cone19ag0878 Cone-Chr19:6886699 Cone6ag0493 Cone-Chr6:2454752 1.50E-280 wgd
Cone19ag0878 Cone-Chr19:6886699 Cone9ag0499 Cone-Chr9:2387964 1.09E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82397 PF03372 Exo_endo_phos 8.00E-19 CL0530 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0878 - - - 0.0