Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0883 ATGGAAATGAGTGATGACAGAGATAAACCTCCCCTACAAAATAAACCTGAAGAGGATCACATAAACCGCCCGCCTAGTAGTAGTACTCTACTCTCAAATTGGGGTTTCCCCCGTTCAAATCTCACAACTACATCTTTAATGGTGGATCCATGTAACCCGAACCTACGGGGCCAATCAACCAATGCACAAAACTTAGGAATTCCCGGCATTAATGTTCATAACACTCCATTATTGAAGGAGGGAATTTTCTTGCCCGGAGTAGTACCACCAGGCTTATCCCAATTCTCAACCGATTCTGCTTTCATAGAGTGCGCTGCTCAGTTTTCGTCCTTCAATGGAGGGAGTCTCTGTGACATGATGAACCCTTTAAAGATTCCGGAATCTACAAATATTTTTTGTCATAGAGTTCCCGAAAGCAATGGGTTCAGATTGGTATCTTCTGGGCAATCTTACAGAGATGTCTCGTTGTCTGTTGACCGTGGTGCGGCCCACGGAGTGAGCCCAACTAACAATGAGCGAAGAAGTAGTGAGGGTCTCGAATCGGACGAAGCTGAGTTTAGTGGTGATTGTGGTGGGGCCGGAGGCGAGCCCGGTTGGGAACCTTCTTCCTCAACGGGAATTATTAACTCGAAGAAGCGGATAAGAGGCGGGAAGAAAACGGAACTTGATCGAGCCAAAGGAGCTGTACCGGAAAATATGGAAATCGCAAAAGAAGATACGGTGAAAGATCAGAAGGGAAACAAAGAAATTAGTCCAACTACTACTAACAAGGCCATGATGAAACAGGGTAAACAAGGGTCTCAAGCTTTGGATCAAGTCAAAGAAGAATATATTCATGTTAGAGCTCGACGAGGCCAAGCGACAAATAGCCATAGTCTTGCAGAAAGAGTAAGGAGAGAGAAGATCAGTGAGAGGATGAAGTTCCTTCAAGACCTAGTCCCTGGTTGCAGCAAGGTAACGGGAAAGGCGGTGATGCTCGATGAAATCATAAACTACGTACAATCATTGCAACGGCAAGTCGAATTTTTGTCGATGAAACTAGCAACAGTCAATCCGTGGAGTGATTTGAACATAGAAACGCTTCAAGCAAAGAATATTTTTCAATCAATGCCCGGTCCATCATCCTTGTTCGGGTTTTCTCCGGAGATGCCTATGCTTTATTCCTCGCCAAATCAATCTCAACATGGACTTATTATACCAAAAGGTCTTCCTCCGGGCTCGTCAGATATTCTTAAACGTACCATTCATTCCCAGCTGAATCAAACGTCTAGTGGATTTAAGGACCCTTCACAGATATCAAGCACATGGGAGGACGAGCTACTCAATGTTGTGCAGATGAGATTCAACGGTTCTCTGCCCCCGGAAATACGAAAGTTGAGCTTTGAATAG 1389 44.78 MEMSDDRDKPPLQNKPEEDHINRPPSSSTLLSNWGFPRSNLTTTSLMVDPCNPNLRGQSTNAQNLGIPGINVHNTPLLKEGIFLPGVVPPGLSQFSTDSAFIECAAQFSSFNGGSLCDMMNPLKIPESTNIFCHRVPESNGFRLVSSGQSYRDVSLSVDRGAAHGVSPTNNERRSSEGLESDEAEFSGDCGGAGGEPGWEPSSSTGIINSKKRIRGGKKTELDRAKGAVPENMEIAKEDTVKDQKGNKEISPTTTNKAMMKQGKQGSQALDQVKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPWSDLNIETLQAKNIFQSMPGPSSLFGFSPEMPMLYSSPNQSQHGLIIPKGLPPGSSDILKRTIHSQLNQTSSGFKDPSQISSTWEDELLNVVQMRFNGSLPPEIRKLSFE 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6924175 6926201 + Conep19aG0090800.1 Cone19ag0883 459320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0883 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 286 336 IPR011598 GO:0046983(InterPro)
Cone19ag0883 462 MobiDBLite consensus disorder prediction 214 246 - -
Cone19ag0883 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 354 IPR036638 GO:0046983(InterPro)
Cone19ag0883 462 MobiDBLite consensus disorder prediction 1 34 - -
Cone19ag0883 462 FunFam Basic helix-loop-helix transcription factor 283 355 - -
Cone19ag0883 462 MobiDBLite consensus disorder prediction 247 267 - -
Cone19ag0883 462 SMART finulus 292 342 IPR011598 GO:0046983(InterPro)
Cone19ag0883 462 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 394 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone19ag0883 462 MobiDBLite consensus disorder prediction 159 267 - -
Cone19ag0883 462 MobiDBLite consensus disorder prediction 1 22 - -
Cone19ag0883 462 Pfam Helix-loop-helix DNA-binding domain 289 337 IPR011598 GO:0046983(InterPro)
Cone19ag0883 462 CDD bHLH_AtBPE_like 276 361 - -
Cone19ag0883 462 Gene3D - 283 353 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0902 Cone-Chr17:7112047 Cone19ag0883 Cone-Chr19:6924175 2.47E-44 dispersed
Cone19ag0883 Cone-Chr19:6924175 Cone8ag1204 Cone-Chr8:10239336 1.93E-48 dispersed
Cone13ag0883 Cone-Chr13:7839782 Cone19ag0883 Cone-Chr19:6924175 6.50E-230 wgd
Cone19ag0883 Cone-Chr19:6924175 Cone2ag0572 Cone-Chr2:3296185 2.12E-17 wgd
Cone19ag0883 Cone-Chr19:6924175 Cone6ag0499 Cone-Chr6:2493438 3.06E-95 wgd
Cone19ag0883 Cone-Chr19:6924175 Cone9ag0512 Cone-Chr9:2454901 3.06E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45339 PF01565 FAD_binding_4 2.80E-20 CL0077 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0883 - - - 0.0