Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone19ag0892 | ATGAACTTGGAGGAGAAAACTACAATGGAGTTCCTTCCACCTTCCGAGCACCTCTGCTACGTCCGCTGCAACTACTGCAACACCGTTCTTGCGGTTGGGATTCCATGCAAACGTTTGTTGGACACAGTGACGGTGAAATGTGGCCATTGTAGCAACCTCTCCTTCCTCACTACAAGGCCTCCACTTCAAGGCCAATGCCTTGATCACCCACCCACCACCGTCCAGGAGAGACAGGGATTTTGCAATGACTTCCTTAAGGGCCAATTAAGCACTACGTCCACCTCTTCTTCAACATCCAGTGAGCCCTTGTCACCTAAAGCACCATCCTTTGTTGTGAAACCTCCTGAGAAGAAACACAGGCTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAAATACAGCGCATCAAAGCGGCCAGCCCTGAGATCCCACATCGAGAAGCTTTCAGTGCAGCTGCAAAAAACGTAACATAG | 474 | 49.58 | MNLEEKTTMEFLPPSEHLCYVRCNYCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPLQGQCLDHPPTTVQERQGFCNDFLKGQLSTTSTSSSTSSEPLSPKAPSFVVKPPEKKHRLPSAYNRFMKEEIQRIKAASPEIPHREAFSAAAKNVT | 157 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 6993345 | 6994205 | - | Conep19aG0091700.1 | Cone19ag0892 | 459329 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone19ag0892 | 157 | PANTHER | PROTEIN YABBY 6-RELATED | 14 | 156 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER) | |
| Cone19ag0892 | 157 | Pfam | YABBY protein | 14 | 155 | IPR006780 | GO:0007275(InterPro) | |
| Cone19ag0892 | 157 | MobiDBLite | consensus disorder prediction | 90 | 105 | - | - | |
| Cone19ag0892 | 157 | MobiDBLite | consensus disorder prediction | 90 | 118 | - | - | |
| Cone19ag0892 | 157 | SUPERFAMILY | HMG-box | 103 | 153 | IPR036910 | - | |
| Cone19ag0892 | 157 | CDD | HMG-box_SF | 120 | 154 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone19ag0892 | Cone-Chr19:6993345 | Cone8ag0386 | Cone-Chr8:2354763 | 7.54E-38 | dispersed | |
| Cone13ag0895 | Cone-Chr13:7927670 | Cone19ag0892 | Cone-Chr19:6993345 | 5.27E-92 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45340 | PF03151 | TPT | 9.50E-45 | CL0184 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone19ag0892 | K25796 | - | vvi:100261225 | 254.988 |