Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0892 ATGAACTTGGAGGAGAAAACTACAATGGAGTTCCTTCCACCTTCCGAGCACCTCTGCTACGTCCGCTGCAACTACTGCAACACCGTTCTTGCGGTTGGGATTCCATGCAAACGTTTGTTGGACACAGTGACGGTGAAATGTGGCCATTGTAGCAACCTCTCCTTCCTCACTACAAGGCCTCCACTTCAAGGCCAATGCCTTGATCACCCACCCACCACCGTCCAGGAGAGACAGGGATTTTGCAATGACTTCCTTAAGGGCCAATTAAGCACTACGTCCACCTCTTCTTCAACATCCAGTGAGCCCTTGTCACCTAAAGCACCATCCTTTGTTGTGAAACCTCCTGAGAAGAAACACAGGCTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAAATACAGCGCATCAAAGCGGCCAGCCCTGAGATCCCACATCGAGAAGCTTTCAGTGCAGCTGCAAAAAACGTAACATAG 474 49.58 MNLEEKTTMEFLPPSEHLCYVRCNYCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPLQGQCLDHPPTTVQERQGFCNDFLKGQLSTTSTSSSTSSEPLSPKAPSFVVKPPEKKHRLPSAYNRFMKEEIQRIKAASPEIPHREAFSAAAKNVT 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6993345 6994205 - Conep19aG0091700.1 Cone19ag0892 459329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0892 157 PANTHER PROTEIN YABBY 6-RELATED 14 156 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
Cone19ag0892 157 Pfam YABBY protein 14 155 IPR006780 GO:0007275(InterPro)
Cone19ag0892 157 MobiDBLite consensus disorder prediction 90 105 - -
Cone19ag0892 157 MobiDBLite consensus disorder prediction 90 118 - -
Cone19ag0892 157 SUPERFAMILY HMG-box 103 153 IPR036910 -
Cone19ag0892 157 CDD HMG-box_SF 120 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0892 K25796 - - vvi:100261225 254.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0892 Cone-Chr19:6993345 Cone8ag0386 Cone-Chr8:2354763 7.54E-38 dispersed
Cone13ag0895 Cone-Chr13:7927670 Cone19ag0892 Cone-Chr19:6993345 5.27E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g12 . Blo16g01078 . . . . . . Cmo04g01795 Cmo18g01120 . Cma18g01098 . Car18g01013 Sed07g2037 Cpe09g00228 Cpe01g01514 Bhi07g01472 Tan04g0975 Cmetu10g1095 . . . . . . . . . . . Cone13ag0895 Cone19ag0892 . . Lsi04g00355 Csa05g02521 . Cme10g00349 . . . . . . . . . . . Cma04g01709 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0895 . 1 171 C2C2-YABBY Transcription Factor Family AT1G69180 66.9 1.9e-49 193.0
Cone19ag0892 . 1 155 C2C2-YABBY Transcription Factor Family AT1G69180 58.2 1.1e-41 167.2
Cone9ag0698 . 69 236 C2C2-YABBY Transcription Factor Family AT2G45190 54.9 3.9e-41 165.2
Cone12ag0372 . 66 230 C2C2-YABBY Transcription Factor Family AT2G45190 57.2 6.7e-41 164.5
Cone8ag0386 . 69 233 C2C2-YABBY Transcription Factor Family AT2G45190 57.5 7.4e-40 161.0
Cone6ag0698 . 69 236 C2C2-YABBY Transcription Factor Family AT2G45190 53.5 4.8e-39 158.3
Cone11ag1432 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 60.0 4.0e-50 195.3
Cone12ag0372 . 23 205 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 3.0e-42 169.1
Cone6ag0698 . 26 218 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 3.4e-41 165.6
Cone8ag0386 . 26 202 C2C2-YABBY Transcription Factor Family AT1G08465 53.7 4.4e-41 165.2
Cone4ag0666 . 11 175 C2C2-YABBY Transcription Factor Family AT1G08465 54.5 9.8e-41 164.1
Cone18ag0157 . 1 150 C2C2-YABBY Transcription Factor Family AT1G08465 60.7 9.8e-41 164.1
Cone9ag0698 . 36 235 C2C2-YABBY Transcription Factor Family AT4G00180 56.8 2.8e-52 202.6
Cone6ag0698 . 36 235 C2C2-YABBY Transcription Factor Family AT4G00180 56.5 8.2e-52 201.1
Cone8ag0386 . 36 232 C2C2-YABBY Transcription Factor Family AT4G00180 51.7 1.1e-45 180.6
Cone12ag0372 . 33 229 C2C2-YABBY Transcription Factor Family AT4G00180 52.4 2.2e-44 176.4
Cone4ag0666 . 11 176 C2C2-YABBY Transcription Factor Family AT2G26580 72.5 5.3e-62 234.6
Cone11ag1432 . 4 177 C2C2-YABBY Transcription Factor Family AT2G26580 54.6 4.9e-44 174.9
Cone6ag0698 . 26 200 C2C2-YABBY Transcription Factor Family AT2G26580 50.8 1.3e-41 166.8
Cone9ag0698 . 26 208 C2C2-YABBY Transcription Factor Family AT2G26580 50.3 1.8e-41 166.4
Cone8ag0386 . 26 198 C2C2-YABBY Transcription Factor Family AT2G26580 52.0 1.9e-40 162.9
Cone12ag0372 . 23 193 C2C2-YABBY Transcription Factor Family AT2G26580 52.0 1.5e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45340 PF03151 TPT 9.50E-45 CL0184 Cone TF