Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0901 ATGGGGGAAACAAACGAAGGAAGAAGAAACAGAGCAATGGAGAAATTCTCTCTACAAACGGACAAGTACCCAAGAGATCTACTACAGAGATTCACGTGCAGCGGCAATTCGAACCAATCCCAATTTGAAAAAGGAGGAGGAGAAATTTCAGAAGAGATCGAGCTAAATCTCGGCCTCTCGTTAGGCGGCCGATTCGGGGTCGATAAGAACTTGAATAAGAAGCTAATTCGATCCTCATCAATCGGCGGAACAACCCCACTTGTGAGAGAAGAAACCGCTACTACGCCGCCGTCTACGGCGGCGACTTACTCATCACTCGTAAGAACCTCCTCTCTTCCGACGGAGACGGAGGAGGAGTGGCGGAAGAGGAAGGAGTTACAGACTTTGAGAAGATTAGAAGCAAAGAGGAGGAGGTCAGAGAAACAGAGGAATAAAGAAGGAGGGTATAATAGTGGGACTGTTGTTATTAGAGGGTGTTTAGATGAAGAAAGGAGAGAAAATGAGGGTTTGATGATTGAATTGAATTTGAGAGAAAATAGTAGTAATATTTCTAATAATATTAAGCAAGCTCTACCATTTGGGTTGCCGAATTGGGCGGCGGCCACTAGGCAAGCTCTGCTTGGTGGAGCTCTTATGGGACAAGGTGGTTCTGCTTCTCAAGGCTCGATCGAATCTCAAGGCGGGAGCTCGTCCGGGATGTCGGAATTGGAGAGTAAACCTCTTCAAGGCTCGAGTAGTTGTGGCGAAGTAAGAAGCCCATGTAGTAACCAGACTATAACAGAACGAGGCAACCAAGATATGATGGGATCTTCCGGAACAAAACCGAGCAAGAACCTGTCCCGATCATCCAGCATGGAGATGGAGATAAATCCTTCTAAGAAACTGGAATCTTCCTCCGAGCACAGGACGAGGAAAGAGATTGGGGTGAATGCAGTGGAAGACATGCCATGTGTTTTCACAATAGGCGACGGTCCAAACGGGCGAAAAGTAGAAGGTATTCTATACAAATACGGTAAGGGGGAAGAGGTCCGAATAATGTGCGTTTGCCATGGGAACTTCTTGTCCCCAGCTGAGTTCGTCAAACATGCTGGTGGAGGTGACGTGGCTCATCCACTTAGGCATATAGTTGTAAACCCCAACTCTTCTTCTTCTTTGCTGTAA 1161 46.86 MGETNEGRRNRAMEKFSLQTDKYPRDLLQRFTCSGNSNQSQFEKGGGEISEEIELNLGLSLGGRFGVDKNLNKKLIRSSSIGGTTPLVREETATTPPSTAATYSSLVRTSSLPTETEEEWRKRKELQTLRRLEAKRRRSEKQRNKEGGYNSGTVVIRGCLDEERRENEGLMIELNLRENSSNISNNIKQALPFGLPNWAAATRQALLGGALMGQGGSASQGSIESQGGSSSGMSELESKPLQGSSSCGEVRSPCSNQTITERGNQDMMGSSGTKPSKNLSRSSSMEMEINPSKKLESSSEHRTRKEIGVNAVEDMPCVFTIGDGPNGRKVEGILYKYGKGEEVRIMCVCHGNFLSPAEFVKHAGGGDVAHPLRHIVVNPNSSSSLL 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7024991 7027769 + Conep19aG0092700.1 Cone19ag0901 459338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0901 386 MobiDBLite consensus disorder prediction 215 292 - -
Cone19ag0901 386 Pfam Putative nuclear localisation signal in Ninja/AFP proteins 106 142 IPR032310 -
Cone19ag0901 386 Pfam Tify domain binding domain 344 377 IPR032308 -
Cone19ag0901 386 Pfam Ethylene-responsive binding factor-associated repression 50 83 IPR012463 -
Cone19ag0901 386 MobiDBLite consensus disorder prediction 213 303 - -
Cone19ag0901 386 PANTHER AFP HOMOLOG 2 7 381 IPR031307 GO:0005634(PANTHER)|GO:0007165(InterPro)|GO:0009737(PANTHER)|GO:0045892(PANTHER)
Cone19ag0901 386 Coils Coil 122 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0901 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0502 Cone-Chr16:7097339 Cone19ag0901 Cone-Chr19:7024991 2.29E-53 dispersed
Cone19ag0901 Cone-Chr19:7024991 Cone2ag0507 Cone-Chr2:2781047 5.02E-44 dispersed
Cone13ag0904 Cone-Chr13:7975384 Cone19ag0901 Cone-Chr19:7024991 2.06E-233 wgd
Cone16ag0212 Cone-Chr16:1424181 Cone19ag0901 Cone-Chr19:7024991 1.09E-24 wgd
Cone19ag0901 Cone-Chr19:7024991 Cone2ag0797 Cone-Chr2:33992579 2.69E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g33 . . . . . Bpe10g00900 Bma14g01666 Bma15g00131 Cmo04g01789 Cmo18g01124 . Cma18g01103 . Car18g01017 Sed06g1778 Cpe09g00223 Cpe01g01507 Bhi07g01484 Tan04g0992 Cmetu10g1842 Lac13g0380 Hepe10g1799 . . Cla05g02390 . . Cco05g2637 Clacu05g2564 Cmu05g2421 Cre05g2538 Cone13ag0904 Cone19ag0901 . . Lsi04g00361 Csa05g02516 Chy10g01060 Cme10g00355 Blo06g00928 Blo11g00794 . . . . . . . . . Cma04g01704 . Car04g01739 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006440 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38