Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0901 ATGGGGGAAACAAACGAAGGAAGAAGAAACAGAGCAATGGAGAAATTCTCTCTACAAACGGACAAGTACCCAAGAGATCTACTACAGAGATTCACGTGCAGCGGCAATTCGAACCAATCCCAATTTGAAAAAGGAGGAGGAGAAATTTCAGAAGAGATCGAGCTAAATCTCGGCCTCTCGTTAGGCGGCCGATTCGGGGTCGATAAGAACTTGAATAAGAAGCTAATTCGATCCTCATCAATCGGCGGAACAACCCCACTTGTGAGAGAAGAAACCGCTACTACGCCGCCGTCTACGGCGGCGACTTACTCATCACTCGTAAGAACCTCCTCTCTTCCGACGGAGACGGAGGAGGAGTGGCGGAAGAGGAAGGAGTTACAGACTTTGAGAAGATTAGAAGCAAAGAGGAGGAGGTCAGAGAAACAGAGGAATAAAGAAGGAGGGTATAATAGTGGGACTGTTGTTATTAGAGGGTGTTTAGATGAAGAAAGGAGAGAAAATGAGGGTTTGATGATTGAATTGAATTTGAGAGAAAATAGTAGTAATATTTCTAATAATATTAAGCAAGCTCTACCATTTGGGTTGCCGAATTGGGCGGCGGCCACTAGGCAAGCTCTGCTTGGTGGAGCTCTTATGGGACAAGGTGGTTCTGCTTCTCAAGGCTCGATCGAATCTCAAGGCGGGAGCTCGTCCGGGATGTCGGAATTGGAGAGTAAACCTCTTCAAGGCTCGAGTAGTTGTGGCGAAGTAAGAAGCCCATGTAGTAACCAGACTATAACAGAACGAGGCAACCAAGATATGATGGGATCTTCCGGAACAAAACCGAGCAAGAACCTGTCCCGATCATCCAGCATGGAGATGGAGATAAATCCTTCTAAGAAACTGGAATCTTCCTCCGAGCACAGGACGAGGAAAGAGATTGGGGTGAATGCAGTGGAAGACATGCCATGTGTTTTCACAATAGGCGACGGTCCAAACGGGCGAAAAGTAGAAGGTATTCTATACAAATACGGTAAGGGGGAAGAGGTCCGAATAATGTGCGTTTGCCATGGGAACTTCTTGTCCCCAGCTGAGTTCGTCAAACATGCTGGTGGAGGTGACGTGGCTCATCCACTTAGGCATATAGTTGTAAACCCCAACTCTTCTTCTTCTTTGCTGTAA 1161 46.86 MGETNEGRRNRAMEKFSLQTDKYPRDLLQRFTCSGNSNQSQFEKGGGEISEEIELNLGLSLGGRFGVDKNLNKKLIRSSSIGGTTPLVREETATTPPSTAATYSSLVRTSSLPTETEEEWRKRKELQTLRRLEAKRRRSEKQRNKEGGYNSGTVVIRGCLDEERRENEGLMIELNLRENSSNISNNIKQALPFGLPNWAAATRQALLGGALMGQGGSASQGSIESQGGSSSGMSELESKPLQGSSSCGEVRSPCSNQTITERGNQDMMGSSGTKPSKNLSRSSSMEMEINPSKKLESSSEHRTRKEIGVNAVEDMPCVFTIGDGPNGRKVEGILYKYGKGEEVRIMCVCHGNFLSPAEFVKHAGGGDVAHPLRHIVVNPNSSSSLL 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7024991 7027769 + Conep19aG0092700.1 Cone19ag0901 459338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0901 386 MobiDBLite consensus disorder prediction 215 292 - -
Cone19ag0901 386 Pfam Putative nuclear localisation signal in Ninja/AFP proteins 106 142 IPR032310 -
Cone19ag0901 386 Pfam Tify domain binding domain 344 377 IPR032308 -
Cone19ag0901 386 Pfam Ethylene-responsive binding factor-associated repression 50 83 IPR012463 -
Cone19ag0901 386 MobiDBLite consensus disorder prediction 213 303 - -
Cone19ag0901 386 PANTHER AFP HOMOLOG 2 7 381 IPR031307 GO:0005634(PANTHER)|GO:0007165(InterPro)|GO:0009737(PANTHER)|GO:0045892(PANTHER)
Cone19ag0901 386 Coils Coil 122 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0502 Cone-Chr16:7097339 Cone19ag0901 Cone-Chr19:7024991 2.29E-53 dispersed
Cone19ag0901 Cone-Chr19:7024991 Cone2ag0507 Cone-Chr2:2781047 5.02E-44 dispersed
Cone13ag0904 Cone-Chr13:7975384 Cone19ag0901 Cone-Chr19:7024991 2.06E-233 wgd
Cone16ag0212 Cone-Chr16:1424181 Cone19ag0901 Cone-Chr19:7024991 1.09E-24 wgd
Cone19ag0901 Cone-Chr19:7024991 Cone2ag0797 Cone-Chr2:33992579 2.69E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0901 - - - 0.0