Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0902 ATGAAATGCCATCTTCTGTTTGGTAAAGTTCTGGTCTTTTTCTATTATTACCTCCTGCTATGCCGTTTACTGTCTTCAGCTTCCGGGCAAGTAGTAGCTTCTGAAAAATCGATTTTACTTGAATTCAAACGCTCCGTTTCGGATCCATCTGGGATTCTCTCCAACTGGGTTTCCAACTCATCTTCTTCAAATCACTGTTCCTGGTTCGGCGTTTCTTGCGACTCGAATTTCCGAGTTTCATCGCTCAACATCACTTTCATTAGTGGCAAAAGAGGTAAATACCAAGCTCCTACTTGTTCTTCGAAGCTTTCTCAGTTTCCATACGAGGGATTTGGAATTAGAAGAGTCTGTTCACTTAGTGGTAAGAAATTAGTAGGAAAGTTGTCACCATTGATTGGGAATCTTACTCAGCTTAGAGTCTTATCACTTCCTTGCAATGAACTTTGTGGTGAAATTCCTCCAGAAATTTTTGGCCTGGAGAAATTGGAAGTGCTTGATCTTGAAGGGAATTTGTTGAATGGGAAATTGATTGAAAACTTTTCGGGGTTGAGATGGCTAAAGGTTTTGAATCTGGGGTTTAATAGCATTTACGGGGAAATTCCTGATTCACTCTCAAAATGTACAAGTTTGAGGATCCTAAATTTAGCCGGCAATCAAGTGAACGGTTCAATTCCCCAGTTTTTTAGTAATTTTTCGAGGTTGGAGGGGCTTTATTTGTCACAAAACAGGCTAACTGATTATTTGCCAGCTCAGTTCGGTGAGGGTTTTCAAAACCTTGAACATCTCGATCTTTCCGGAAACTTCCTATTTGGTCCGATTCCGAGTAGTTTGGGTAACTCTTTACAGTTAAGAACTCTTCTGTTGTTTTTGAATAATTTTGATGATGTCATTCCTCCGGAATTTGGCCGGCTTCAAATGCTTGAAGTTCTCGATGTTTCTAGAAACAGTCTGAGCGGTCTAATCCCAGCTGAGCTCGGACGTTGCCATAAATTATCAGTCCTTGTCCTCTCTAATCTTTACAGCACACTTTTGACTAAGCAGAATTCAAGTGAAGAAGATCCGTTCATTGAATCTCTAGGCGATTTTCGAGACGAGTACAATTATTTTAAAGGCACTATTCCGGATGAAATTACAAGTCTTCCCAACCTGAGGATACTTTGGGCTCCAAGGTCCACTCTTGCCGGTGGGCTTTCGAGCAATTGGGCTGATTGTGAGAGCTTGGAAATGCTCAACTTGGCCCAAAACCTACTAACTGGAGAGATAATCGGAGTATTTGAAAGGTGTAAAAACCTGCATTATCTCGATTTGAGCTCAAATCGACTAACCGGAAAGCTTGATGAGAAGCTTCCTATTCCATGTATACCCTTCTTCGACATAGGCAATAATCTCATATCAGGACCCATTCCAAGCTATAATTACAGTTCTTGCCCCCATAGGCCTTCATTTAAGTTGCACCGTCTTGGCATTTACAATCCAGAAGATGCTTACTTATCATTTTTTACTTGTCAATCTCGGCTTATCATGGATCTTCCATTTACTGGTAATAGTTTTTCTGTGATGCATAATTTTGGTAGTAACAACTTGAGTGGTAGTATTCAGAGCCTCCCGATTCCACTTAAGATGTTGGGAAGTCGGGCGGATTATGCATTTCTTGCTGATGGGAACAAACTTAGTGGTTCATTTCCCGGAAGGTTACTTGAAAGGTGTGATGAATTGAAAGGGATGATTGCAAATGTCAGCTACAATGATTTATCGGGTCATATTCCATTTGACGTTGGAACAAAATGCAGATCTCTTCGGTTCATGGATGCTTCTTATAATCAGATTTCCGGGTCAATACCTCCGAGTTTTGGAGACTTTGAATCTCTTGTGGTTCTCGATTTGAGTGGGAATAAATTGCAAGGTGTGATTCCAAATGAAGTTAGCCGTTTGAAGAATCTAAAGTATCTTTCTTTGGCTAGTAATGGATTAACTGGTTCTATACCTTCTAGCTTTACGTGGTTACGATCCCTCCAGGTTCTCGAGCTTTCTTCTAACAATATTTCAGGTGAGATTCCTCAAGGCCTTGTCTACTTGAGAAGATTAACTACTCTTCAGCTTAAAAATAATAAACTCTCAGGGAAGATTCCTTCCGGTTTGGCTAACCTGAAGTCGCTTTCTTCATTTAATGTCTCATTCAATAACCTTTCCGGGTCCATTCCATTAAATTATAATAATGCAATGAATTGTAGCAGCTTTCTCGGAAATCCATTTCTCTACTCTTGCCATATTGTTTCCCTTACGGTTCCATCTCCAAATTTGCCTGATGACTATGAAGGAGATTCAAGGGATAACAAATCTTCTCCTTCCGGAAGCAACAGCAAAAGACGAATCAAGGGACTTACCTCGATAGAGATCGCATCTATAATATCTGCTTCGGTTATTGCATCGGTTCTTCTTGCTCTTGTTATCCTCTTCTTCTACACAAGGAAATGGGTCCCTGATTCCCGGATTCAGGTTTCGGAATCAAGAGAAATTACGGTTTTTACCGACATTGGAGTTCAGTTGACTTTTGATAGTATTGTCCGGTCAACAGGCAATTTCAGTGCAAGCAACTGTATCGGAAATGGGGGGTTCGGGGCCACTTACAAGGCCGAAATCTCGCCCGGAACAATTGTTGCCGTAAAACGACTCTCCGTTGGACGGTTTCAAGGTGTCCAACAATTTCATGCGGAGATTAAGACTCTTGGAAGAGTAAGGAACCCTAATCTCGTAACCCTAATTGGTTATCATGCAAGTGACACGGAAATGTTCCTTATATACAACTACTTACCCGGGGGCAATTTGGAGAATTTCATCAAGGAAAGATTGACTCGAGCTGTGGATTGGAAGATTCTTCACAAGATTGCTCTAGACATTGCGCGGGCGCTGGCCTACCTCCACGACCAATGTGTTCCTCGGGTCCTACACCGAGACGTCAAGCCGAGCAACATATTGTTAGACAACGAGTTTAACGCTTACTTGTCTGATTTCGGTTTGTCGAGACTCTTAGGAACTTCCGAGACTCATGCAACAACTGGAGTGGCGGGGACATTTGGATATGTAGCCCCAGAGTATGCAATGACCTGTCGTGTCTCGGAAAAAGCCGACGTTTATAGTTACGGGGTGGTTTTGCTTGAGTTGATATCAGATAAGAAGGCATTGGATCCCTCATTTTCTTCACATGGGAACGGTTTCAATATTGTTTCTTGGGCTTGTATGCAGTTGAGGCTTGGGAAAGCTAATGAGGTTTTTACAGCCGGGCTTTGGGACGTTGCCCCTCATGATGATCTTGTTCAGGTGCTCCACTTGGCAGTTACTTGTACGGTTGAGACTCTTTCAACCCGGCCCACTATGAGGCAGGTTGTTCAAAGATTGAAGCAAGTTCAACCTTGCTAG 3417 42.11 MKCHLLFGKVLVFFYYYLLLCRLLSSASGQVVASEKSILLEFKRSVSDPSGILSNWVSNSSSSNHCSWFGVSCDSNFRVSSLNITFISGKRGKYQAPTCSSKLSQFPYEGFGIRRVCSLSGKKLVGKLSPLIGNLTQLRVLSLPCNELCGEIPPEIFGLEKLEVLDLEGNLLNGKLIENFSGLRWLKVLNLGFNSIYGEIPDSLSKCTSLRILNLAGNQVNGSIPQFFSNFSRLEGLYLSQNRLTDYLPAQFGEGFQNLEHLDLSGNFLFGPIPSSLGNSLQLRTLLLFLNNFDDVIPPEFGRLQMLEVLDVSRNSLSGLIPAELGRCHKLSVLVLSNLYSTLLTKQNSSEEDPFIESLGDFRDEYNYFKGTIPDEITSLPNLRILWAPRSTLAGGLSSNWADCESLEMLNLAQNLLTGEIIGVFERCKNLHYLDLSSNRLTGKLDEKLPIPCIPFFDIGNNLISGPIPSYNYSSCPHRPSFKLHRLGIYNPEDAYLSFFTCQSRLIMDLPFTGNSFSVMHNFGSNNLSGSIQSLPIPLKMLGSRADYAFLADGNKLSGSFPGRLLERCDELKGMIANVSYNDLSGHIPFDVGTKCRSLRFMDASYNQISGSIPPSFGDFESLVVLDLSGNKLQGVIPNEVSRLKNLKYLSLASNGLTGSIPSSFTWLRSLQVLELSSNNISGEIPQGLVYLRRLTTLQLKNNKLSGKIPSGLANLKSLSSFNVSFNNLSGSIPLNYNNAMNCSSFLGNPFLYSCHIVSLTVPSPNLPDDYEGDSRDNKSSPSGSNSKRRIKGLTSIEIASIISASVIASVLLALVILFFYTRKWVPDSRIQVSESREITVFTDIGVQLTFDSIVRSTGNFSASNCIGNGGFGATYKAEISPGTIVAVKRLSVGRFQGVQQFHAEIKTLGRVRNPNLVTLIGYHASDTEMFLIYNYLPGGNLENFIKERLTRAVDWKILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDNEFNAYLSDFGLSRLLGTSETHATTGVAGTFGYVAPEYAMTCRVSEKADVYSYGVVLLELISDKKALDPSFSSHGNGFNIVSWACMQLRLGKANEVFTAGLWDVAPHDDLVQVLHLAVTCTVETLSTRPTMRQVVQRLKQVQPC 1138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7030483 7034229 - Conep19aG0092800.1 Cone19ag0902 459339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0902 1138 Pfam Leucine rich repeat N-terminal domain 33 74 IPR013210 -
Cone19ag0902 1138 SMART LRR_sd22_2 692 715 - -
Cone19ag0902 1138 SMART LRR_sd22_2 644 665 - -
Cone19ag0902 1138 SMART LRR_sd22_2 620 641 - -
Cone19ag0902 1138 SMART LRR_sd22_2 231 261 - -
Cone19ag0902 1138 SMART LRR_sd22_2 159 182 - -
Cone19ag0902 1138 Gene3D Ribonuclease Inhibitor 347 483 IPR032675 -
Cone19ag0902 1138 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 937 1138 - -
Cone19ag0902 1138 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 516 760 - -
Cone19ag0902 1138 SMART LRR_typ_2 231 254 IPR003591 -
Cone19ag0902 1138 SMART LRR_typ_2 256 280 IPR003591 -
Cone19ag0902 1138 SMART LRR_typ_2 135 159 IPR003591 -
Cone19ag0902 1138 SMART LRR_typ_2 644 667 IPR003591 -
Cone19ag0902 1138 SMART LRR_typ_2 304 328 IPR003591 -
Cone19ag0902 1138 SMART LRR_typ_2 620 643 IPR003591 -
Cone19ag0902 1138 SMART LRR_typ_2 668 692 IPR003591 -
Cone19ag0902 1138 SMART LRR_typ_2 183 207 IPR003591 -
Cone19ag0902 1138 Gene3D Transferase(Phosphotransferase) domain 1 937 1136 - -
Cone19ag0902 1138 SMART serkin_6 861 1135 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0902 1138 ProSitePatterns Protein kinases ATP-binding region signature. 867 889 IPR017441 GO:0005524(InterPro)
Cone19ag0902 1138 Gene3D Phosphorylase Kinase; domain 1 824 936 - -
Cone19ag0902 1138 Pfam Leucine Rich Repeat 430 447 IPR001611 GO:0005515(InterPro)
Cone19ag0902 1138 Pfam Leucine Rich Repeat 622 644 IPR001611 GO:0005515(InterPro)
Cone19ag0902 1138 Pfam Leucine Rich Repeat 598 619 IPR001611 GO:0005515(InterPro)
Cone19ag0902 1138 Pfam Leucine Rich Repeat 258 279 IPR001611 GO:0005515(InterPro)
Cone19ag0902 1138 Pfam Leucine Rich Repeat 307 328 IPR001611 GO:0005515(InterPro)
Cone19ag0902 1138 Pfam Leucine Rich Repeat 209 231 IPR001611 GO:0005515(InterPro)
Cone19ag0902 1138 Pfam Leucine rich repeat 646 705 IPR001611 GO:0005515(InterPro)
Cone19ag0902 1138 Pfam Leucine rich repeat 137 196 IPR001611 GO:0005515(InterPro)
Cone19ag0902 1138 PRINTS Leucine-rich repeat signature 668 681 - -
Cone19ag0902 1138 PRINTS Leucine-rich repeat signature 431 444 - -
Cone19ag0902 1138 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 23 1135 IPR050647 -
Cone19ag0902 1138 Pfam Protein kinase domain 864 1130 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0902 1138 FunFam Leucine-rich repeat receptor protein kinase EMS1 248 347 - -
Cone19ag0902 1138 Gene3D Ribonuclease Inhibitor 29 105 IPR032675 -
Cone19ag0902 1138 ProSiteProfiles Protein kinase domain profile. 861 1138 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0902 1138 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 825 936 - -
Cone19ag0902 1138 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 356 445 - -
Cone19ag0902 1138 ProSitePatterns Serine/Threonine protein kinases active-site signature. 981 993 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0902 1138 SUPERFAMILY Protein kinase-like (PK-like) 838 1132 IPR011009 -
Cone19ag0902 1138 Gene3D Ribonuclease Inhibitor 106 343 IPR032675 -
Cone19ag0902 1138 Gene3D Ribonuclease Inhibitor 512 761 IPR032675 -
Cone19ag0902 1138 MobiDBLite consensus disorder prediction 768 789 - -
Cone19ag0902 1138 SUPERFAMILY L domain-like 32 342 - -
Cone19ag0902 1138 SUPERFAMILY L domain-like 257 761 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1137 Cone-Chr18:8197882 Cone19ag0902 Cone-Chr19:7030483 8.74E-246 dispersed
Cone19ag0902 Cone-Chr19:7030483 Cone5ag0856 Cone-Chr5:3659828 5.68E-65 dispersed
Cone13ag0906 Cone-Chr13:7982991 Cone19ag0902 Cone-Chr19:7030483 0 wgd
Cone19ag0902 Cone-Chr19:7030483 Cone2ag0559 Cone-Chr2:3175328 1.52E-12 wgd
Cone19ag0902 Cone-Chr19:7030483 Cone6ag0525 Cone-Chr6:2608907 1.35E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82399 PF08711 Med26 5.80E-11 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0902 - - - 0.0