Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0907 ATGGTGAAGATTTGTTGTATTGGAGCTGGCTATGTTGGCGGGCCAACCATGGCTGTGATTGCTCACAAGTGTCCTTCAATCGAGGTAGTTGTTGTGGACATCTCGGAATCCCGGATCACTGCCTGGAACAGTGATCATCTCCCCATTTACGAGCCAGGCCTTGATGAGGTCGTGAAAGAATGCAGAGGAAGGAACCTCTTCTTCAGCACTGACGTCAAAAAGCATGTTACCGAGGCGGACATAGTTTTTGTTTCGGTCAATACTCCAACCAAAACTCAGGGTCTTGGTGCCGGAAAGGCAGCCGATCTCACCTATTGGGAGAGCGCTGCTCGTATGATTGCTGATGTCTCAAAATCCGATAAAATCATTGTCGAAAAATCTACTGTCCCTGTGAAAACAGCCGAGGCAATAGAAAAGATCTTGACCCACAATAGCAAAGGCATCAATTTCCAAATCCTCTCCAACCCGGAATTTCTTGCTGAGGGAACTGCAATTCAAGATCTTTTCAATCCGGATCGGGTTCTAATCGGTGGTAGGGAAACTCCAGAAGGCCAAAAGGCTATAGAAACATTGAGAGATGTTTATGCGCACTGGGTCCCTGTCGAACGGATTCTCTGCACAAATCTCTGGTCAGCAGAGCTTTCAAAACTTGCCGCCAACGCCTTTTTGGCTCAGAGAATATCTTCTGTGAATGCCATTTCTGCTCTATGTGAAGCAACAGGGGCAGATGTTACTCAGGTTTCACATGCTGTTGGTACAGACACCAGAATCGGACCCAAGTTCTTAAATGCTAGTGTTGGATTTGGCGGCTCTTGCTTCCAAAAGGATATCTTAAACTTAGTGTATATCTGTGAATGCAATGGCCTGCCCGAGGTTGCAGATTACTGGAAACAAGTCATCAAAATCAACGACTACCAGAAATCCCGGTTTGTTAACCGCTTAGTTTCATCCATGTTCAATACGGTATCTGGTAAGAAAATAGCCATTTTAGGATTCGCATTTAAGAAAGACACGGGAGATACTAGAGAGACCCCTGCCATCGATGTATGCAAAGGGCTTTTGGGCGACAAGGCAACTCTGAGCATTTACGATCCTCAGGTTCCGGAAGATCAGATCAGGAGAGACCTTGCAATGAAGAAATTCGATTGGGACCATCCGATTCATCTTCAGCCAATGAGCCCTACCTCTGTCAAGGAAGTTAGTGTGGTTTTTGATGCTTATCAGGCAACGAAGGATGCTCATGGGGTCTGTATTTTGACCGAGTGGGACCAGTTCAAAAGTCTTGATTTTCAGAAGATTTATGATAACATGCAGAAACCTGCAATGGTTTTTGATGGGCGTAATATTGTAGACGTTGAGAAGCTGAGACAGATTGGCTTCATCGTTTACTCGATCGGTAAGCCGCTCGATTCATGGCTAAAGGATATGCCTGTTGTTGCCTAA 1443 45.53 MVKICCIGAGYVGGPTMAVIAHKCPSIEVVVVDISESRITAWNSDHLPIYEPGLDEVVKECRGRNLFFSTDVKKHVTEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIIVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIETLRDVYAHWVPVERILCTNLWSAELSKLAANAFLAQRISSVNAISALCEATGADVTQVSHAVGTDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVADYWKQVIKINDYQKSRFVNRLVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKATLSIYDPQVPEDQIRRDLAMKKFDWDHPIHLQPMSPTSVKEVSVVFDAYQATKDAHGVCILTEWDQFKSLDFQKIYDNMQKPAMVFDGRNIVDVEKLRQIGFIVYSIGKPLDSWLKDMPVVA 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7060375 7062518 + Conep19aG0093300.1 Cone19ag0907 459344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0907 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 451 IPR014027 GO:0016616(InterPro)|GO:0051287(InterPro)
Cone19ag0907 480 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Cone19ag0907 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 214 IPR036291 -
Cone19ag0907 480 PIRSF UDPglc_GDPman_dh 2 467 IPR017476 GO:0016616(InterPro)
Cone19ag0907 480 Gene3D - 1 208 - -
Cone19ag0907 480 FunFam UDP-glucose 6-dehydrogenase 209 240 - -
Cone19ag0907 480 FunFam UDP-glucose 6-dehydrogenase 1 208 - -
Cone19ag0907 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616(InterPro)|GO:0051287(InterPro)
Cone19ag0907 480 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 463 IPR036220 -
Cone19ag0907 480 NCBIfam nucleotide sugar dehydrogenase 3 448 IPR017476 GO:0016616(InterPro)
Cone19ag0907 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616(InterPro)|GO:0051287(InterPro)
Cone19ag0907 480 PIRSF UDPglc_DH_euk 1 480 IPR028356 GO:0003979(InterPro)
Cone19ag0907 480 SMART UDPG_MGDP_dh_C_a_2_a 328 452 IPR014027 GO:0016616(InterPro)|GO:0051287(InterPro)
Cone19ag0907 480 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 2 470 IPR028356 GO:0003979(InterPro)|GO:0005634(PANTHER)|GO:0006024(PANTHER)
Cone19ag0907 480 Gene3D - 209 240 - -
Cone19ag0907 480 Gene3D - 241 478 - -
Cone19ag0907 480 FunFam UDP-glucose 6-dehydrogenase 241 478 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0488 Cone-Chr16:6994146 Cone19ag0907 Cone-Chr19:7060375 3.63e-318 dispersed
Cone19ag0907 Cone-Chr19:7060375 Cone4ag0506 Cone-Chr4:2255719 1.21e-318 dispersed
Cone13ag0043 Cone-Chr13:260371 Cone19ag0907 Cone-Chr19:7060375 2.73E-23 wgd
Cone19ag0907 Cone-Chr19:7060375 Cone6ag0538 Cone-Chr6:2659531 2.86E-189 wgd
Cone19ag0907 Cone-Chr19:7060375 Cone7ag0481 Cone-Chr7:2209481 2.56e-318 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0907 K00012 - vvi:100261061 892.878