Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0907 ATGGTGAAGATTTGTTGTATTGGAGCTGGCTATGTTGGCGGGCCAACCATGGCTGTGATTGCTCACAAGTGTCCTTCAATCGAGGTAGTTGTTGTGGACATCTCGGAATCCCGGATCACTGCCTGGAACAGTGATCATCTCCCCATTTACGAGCCAGGCCTTGATGAGGTCGTGAAAGAATGCAGAGGAAGGAACCTCTTCTTCAGCACTGACGTCAAAAAGCATGTTACCGAGGCGGACATAGTTTTTGTTTCGGTCAATACTCCAACCAAAACTCAGGGTCTTGGTGCCGGAAAGGCAGCCGATCTCACCTATTGGGAGAGCGCTGCTCGTATGATTGCTGATGTCTCAAAATCCGATAAAATCATTGTCGAAAAATCTACTGTCCCTGTGAAAACAGCCGAGGCAATAGAAAAGATCTTGACCCACAATAGCAAAGGCATCAATTTCCAAATCCTCTCCAACCCGGAATTTCTTGCTGAGGGAACTGCAATTCAAGATCTTTTCAATCCGGATCGGGTTCTAATCGGTGGTAGGGAAACTCCAGAAGGCCAAAAGGCTATAGAAACATTGAGAGATGTTTATGCGCACTGGGTCCCTGTCGAACGGATTCTCTGCACAAATCTCTGGTCAGCAGAGCTTTCAAAACTTGCCGCCAACGCCTTTTTGGCTCAGAGAATATCTTCTGTGAATGCCATTTCTGCTCTATGTGAAGCAACAGGGGCAGATGTTACTCAGGTTTCACATGCTGTTGGTACAGACACCAGAATCGGACCCAAGTTCTTAAATGCTAGTGTTGGATTTGGCGGCTCTTGCTTCCAAAAGGATATCTTAAACTTAGTGTATATCTGTGAATGCAATGGCCTGCCCGAGGTTGCAGATTACTGGAAACAAGTCATCAAAATCAACGACTACCAGAAATCCCGGTTTGTTAACCGCTTAGTTTCATCCATGTTCAATACGGTATCTGGTAAGAAAATAGCCATTTTAGGATTCGCATTTAAGAAAGACACGGGAGATACTAGAGAGACCCCTGCCATCGATGTATGCAAAGGGCTTTTGGGCGACAAGGCAACTCTGAGCATTTACGATCCTCAGGTTCCGGAAGATCAGATCAGGAGAGACCTTGCAATGAAGAAATTCGATTGGGACCATCCGATTCATCTTCAGCCAATGAGCCCTACCTCTGTCAAGGAAGTTAGTGTGGTTTTTGATGCTTATCAGGCAACGAAGGATGCTCATGGGGTCTGTATTTTGACCGAGTGGGACCAGTTCAAAAGTCTTGATTTTCAGAAGATTTATGATAACATGCAGAAACCTGCAATGGTTTTTGATGGGCGTAATATTGTAGACGTTGAGAAGCTGAGACAGATTGGCTTCATCGTTTACTCGATCGGTAAGCCGCTCGATTCATGGCTAAAGGATATGCCTGTTGTTGCCTAA 1443 45.53 MVKICCIGAGYVGGPTMAVIAHKCPSIEVVVVDISESRITAWNSDHLPIYEPGLDEVVKECRGRNLFFSTDVKKHVTEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIIVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIETLRDVYAHWVPVERILCTNLWSAELSKLAANAFLAQRISSVNAISALCEATGADVTQVSHAVGTDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVADYWKQVIKINDYQKSRFVNRLVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKATLSIYDPQVPEDQIRRDLAMKKFDWDHPIHLQPMSPTSVKEVSVVFDAYQATKDAHGVCILTEWDQFKSLDFQKIYDNMQKPAMVFDGRNIVDVEKLRQIGFIVYSIGKPLDSWLKDMPVVA 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7060375 7062518 + Conep19aG0093300.1 Cone19ag0907 459344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0907 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 451 IPR014027 GO:0016616(InterPro)|GO:0051287(InterPro)
Cone19ag0907 480 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Cone19ag0907 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 214 IPR036291 -
Cone19ag0907 480 PIRSF UDPglc_GDPman_dh 2 467 IPR017476 GO:0016616(InterPro)
Cone19ag0907 480 Gene3D - 1 208 - -
Cone19ag0907 480 FunFam UDP-glucose 6-dehydrogenase 209 240 - -
Cone19ag0907 480 FunFam UDP-glucose 6-dehydrogenase 1 208 - -
Cone19ag0907 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616(InterPro)|GO:0051287(InterPro)
Cone19ag0907 480 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 463 IPR036220 -
Cone19ag0907 480 NCBIfam nucleotide sugar dehydrogenase 3 448 IPR017476 GO:0016616(InterPro)
Cone19ag0907 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616(InterPro)|GO:0051287(InterPro)
Cone19ag0907 480 PIRSF UDPglc_DH_euk 1 480 IPR028356 GO:0003979(InterPro)
Cone19ag0907 480 SMART UDPG_MGDP_dh_C_a_2_a 328 452 IPR014027 GO:0016616(InterPro)|GO:0051287(InterPro)
Cone19ag0907 480 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 2 470 IPR028356 GO:0003979(InterPro)|GO:0005634(PANTHER)|GO:0006024(PANTHER)
Cone19ag0907 480 Gene3D - 209 240 - -
Cone19ag0907 480 Gene3D - 241 478 - -
Cone19ag0907 480 FunFam UDP-glucose 6-dehydrogenase 241 478 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0907 K00012 - - vvi:100261061 892.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0488 Cone-Chr16:6994146 Cone19ag0907 Cone-Chr19:7060375 3.63e-318 dispersed
Cone19ag0907 Cone-Chr19:7060375 Cone4ag0506 Cone-Chr4:2255719 1.21e-318 dispersed
Cone13ag0043 Cone-Chr13:260371 Cone19ag0907 Cone-Chr19:7060375 2.73E-23 wgd
Cone19ag0907 Cone-Chr19:7060375 Cone6ag0538 Cone-Chr6:2659531 2.86E-189 wgd
Cone19ag0907 Cone-Chr19:7060375 Cone7ag0481 Cone-Chr7:2209481 2.56e-318 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g58 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0907 Cone6ag0539 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000749 3 5 3 2 3 4 3 4 4 3 3 4 3 3 3 3 4 5 3 4 4 2 2 3 3 3 2 2 3 2 95