Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0910 ATGGATGATAACGACCATAAGCCCGATCCAGCTGGAACAGAGTTCACTGGCGATTCAAGCTGGAGTACTTTCGCAGCCGACTCCGACAGTGTGTATAACCTATTTTTCAGCACTGTGAGGCAGAACAGTAGCAGTATTCTCGGTGAATTCAGCTGGAATTTTCAGCCGGATGGTGAGAATCGACGGTCGGATGAGTACGGAGGGTTTCCGTACTTCGACCGGATCTGTTCGGAAGCCGATAGATCTTCCGATTTGGCGGGAAGCTTCGAGGATGTGCCAGCGGAGATAAACAACAACTACAGTAACGTGTCCACAGCGTTGAGAAGCTCCAACCAGTCGGTTCCAATCGGATCTGTAGGAGATGCGTCGACTTCTAATCCGTCTTTATCTTCGAGCTCAAGTGAGGCTGGTGAACAGCCGGAGAAGTCTACGGGATCCGGCGGGAAACCGCCTGAGATACCGAGCAAGAAGAATCAGAAGAAAGGGCAAAAGCGAATCCAGCAACAGAGAGTTGCGTTCATAACTAAGAGCGATGCTGATCATCTTGAAGATGGGTATCGGTGGCGGAAATATGGTCAGAAAGCTGTCAAAAATAGTCCTTTCCCTAGGAATTACTATCGGTGCACAAACAGCCAATGCACAGTGAAGAAAAGAGTGGAACGGTCGTCGGAAGATCCCACCCTTGTAATAACAACATATGAAGGCCAGCACTGTCATCACACCATTGGATTCCCACGAGGTGGTGGGTCCAATAGTATCTTCGGTCATATTGATCATCATCATCATCAACCTCCTCCTCCCTTTGCTTCAGCTCATCAATTTCTTCGCCCCGTTTCAGAAGTTCATTACAATCACTCCAATCCGAATACTACCCATCAGCTACCCCACGAAAATATTATTCATCCTATTCCTAGAAGAAGTCCTCAGTCACCTGATCAGCAGCAGATCATATTCGGACATCAATCCCACTTTTTGCCGCCGGCAGATCATGATTGTGATCGTGATGATGATCAGGCAGATGAAGGTCTGCTTGGCGACATTGTGCCCCAAAGAATGCGCAGCGGATGA 1068 48.41 MDDNDHKPDPAGTEFTGDSSWSTFAADSDSVYNLFFSTVRQNSSSILGEFSWNFQPDGENRRSDEYGGFPYFDRICSEADRSSDLAGSFEDVPAEINNNYSNVSTALRSSNQSVPIGSVGDASTSNPSLSSSSSEAGEQPEKSTGSGGKPPEIPSKKNQKKGQKRIQQQRVAFITKSDADHLEDGYRWRKYGQKAVKNSPFPRNYYRCTNSQCTVKKRVERSSEDPTLVITTYEGQHCHHTIGFPRGGGSNSIFGHIDHHHHQPPPPFASAHQFLRPVSEVHYNHSNPNTTHQLPHENIIHPIPRRSPQSPDQQQIIFGHQSHFLPPADHDCDRDDDQADEGLLGDIVPQRMRSG 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7071382 7074020 - Conep19aG0093600.1 Cone19ag0910 459347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0910 355 SMART WRKY_cls 182 241 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone19ag0910 355 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 111 283 IPR044810 GO:0003700(InterPro)
Cone19ag0910 355 Pfam WRKY DNA -binding domain 183 239 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone19ag0910 355 MobiDBLite consensus disorder prediction 323 355 - -
Cone19ag0910 355 FunFam WRKY transcription factor 57 168 242 - -
Cone19ag0910 355 MobiDBLite consensus disorder prediction 112 141 - -
Cone19ag0910 355 Gene3D WRKY domain 169 235 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone19ag0910 355 ProSiteProfiles WRKY domain profile. 177 242 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone19ag0910 355 MobiDBLite consensus disorder prediction 112 168 - -
Cone19ag0910 355 SUPERFAMILY WRKY DNA-binding domain 175 240 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0910 Cone-Chr19:7071382 Cone5ag1608 Cone-Chr5:11290360 1.37E-40 dispersed
Cone13ag0914 Cone-Chr13:8023565 Cone19ag0910 Cone-Chr19:7071382 6.23E-205 wgd
Cone19ag0910 Cone-Chr19:7071382 Cone2ag0536 Cone-Chr2:2960579 2.05E-23 wgd
Cone19ag0910 Cone-Chr19:7071382 Cone6ag0541 Cone-Chr6:2670377 5.39E-79 wgd
Cone19ag0910 Cone-Chr19:7071382 Cone9ag0551 Cone-Chr9:2624393 1.78E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45342 PF04091 Sec15 5.10E-74 CL0295 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0910 - - - 0.0