Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0911 ATGATTTCAGCTTCAGAACCAGATCAGCTCCTAAGCTTTTCTTCTTCTTCTTCTCCTCATCCTCCTGCAGAACCCCATCTTCAAGCCGTTCAACTGTGCAAGAAGGAAGCTGTCCGTGAAGAATGTAGCGAACGATCAACTATTCTAGACTCCTTCTTTCAAGATTCATCATCCATCGCATCGAGCATTAAATACCATGCCGAATTCACACCGGCCTTCTCTCCAGACCACTTCAGTCTCCCCAAAACATACTACGCAACGGCACAAGGCGTTCGCGACATGCTTATCATCAACTGGAACGCTACTTACAGTTACTATGGAACGATGAATGTCAAGCAGGCTTACTATCTTTCCATGGAATTCCTACAGGAACCAGATCTAGCAGTAGGAAACGGAGGTTTAGGGGATGAATCAATGGAGGGAAAGATTCTTCGTTTGACACAGCAGTGTACATTGTGCTCTGCTTCTCTTCAAGACATTATCGCTTGTTTCGAGAGGTGGTCTGGAAATGCTCTAGATTGGAGGAAATTTCTGGAAAAGGTAGCGGTTCAGATGAATGACACTCATCCTACGCTCTGCATCCTGGAATTGATTCGGATATTGATGGATGTAAAGCGCTTGAGCTGGGAAGAAGCTTGGAATATTAATCAAAGAACTGTTGCATATACAAACCATACCATACGGTTCTACCCGAAGCATTAG 702 44.44 MISASEPDQLLSFSSSSSPHPPAEPHLQAVQLCKKEAVREECSERSTILDSFFQDSSSIASSIKYHAEFTPAFSPDHFSLPKTYYATAQGVRDMLIINWNATYSYYGTMNVKQAYYLSMEFLQEPDLAVGNGGLGDESMEGKILRLTQQCTLCSASLQDIIACFERWSGNALDWRKFLEKVAVQMNDTHPTLCILELIRILMDVKRLSWEEAWNINQRTVAYTNHTIRFYPKH 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7083211 7084940 - Conep19aG0093700.1 Cone19ag0911 459348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0911 233 MobiDBLite consensus disorder prediction 1 26 - -
Cone19ag0911 233 PANTHER GLYCOGEN PHOSPHORYLASE 40 126 IPR000811 GO:0005737(PANTHER)|GO:0005975(InterPro)|GO:0005980(PANTHER)|GO:0008184(PANTHER)|GO:0008184(InterPro)|GO:0030170(PANTHER)
Cone19ag0911 233 MobiDBLite consensus disorder prediction 1 22 - -
Cone19ag0911 233 Pfam Carbohydrate phosphorylase 136 227 IPR000811 GO:0005975(InterPro)|GO:0008184(InterPro)
Cone19ag0911 233 Gene3D Glycogen Phosphorylase B; 134 229 - -
Cone19ag0911 233 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 43 227 - -
Cone19ag0911 233 Gene3D Glycogen Phosphorylase B; 45 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0911 K00688 - - csv:101221746 151.369
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0911 Cone-Chr19:7083211 Cone2ag0527 Cone-Chr2:2903881 2.78E-53 dispersed
Cone13ag0915 Cone-Chr13:8029330 Cone19ag0911 Cone-Chr19:7083211 8.63E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g61 . . . . . . . . . . . . . . . Cpe09g00214 . . . . . . . . Cla05g02401 Cam05g2577 Cec05g2611 Cco05g2649 Clacu05g2580 Cmu05g2434 Cre05g2551 Cone13ag0915 Cone19ag0911 . . Lsi04g00371 . . Cme10g00367 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054851 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1